HMM length of domain: 23 aa

c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs.
i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. 
Domain annotation for each sequence:
#	score	bias	c-Evalue	i-Evalue	hmmfrom	hmm to	alifrom	ali to
--	-----	----	--------	--------	-------	------	-------	------
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
1	15.0	1.2	0.00041	0.025	1	23	179	201
2	15.1	0.6	0.00036	0.022	3	23	210	231
3	15.2	2.1	0.00034	0.02	2	23	240	261
4	13.8	0.1	0.00097	0.058	2	23	268	289
5	10.1	1.9	0.015	0.87	1	23	297	320
6	23.5	0.4	7.8e-07	4.7e-05	1	23	325	347

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 0.00041
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    ++C++C+k+F+  + +++H   H
  KWMTBOMO02474 179 FTCDICNKKFNYLDRFQAHKLEH 201
                    89*****************9988 PP

  == domain 2  score: 15.1 bits;  conditional E-value: 0.00036
                    ETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   3 CpdCgksFkrksnLkrHirt.H 23 
                    C  C+k+F ++s L+rH    H
  KWMTBOMO02474 210 CQPCNKTFVTWSGLRRHKENeH 231
                    666**************88777 PP

  == domain 3  score: 15.2 bits;  conditional E-value: 0.00034
                    EETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHirtH 23 
                    kC++Cgk  k+k+ Lk+H r+H
  KWMTBOMO02474 240 KCKVCGKLSKNKHTLKVHERIH 261
                    8*******************99 PP

  == domain 4  score: 13.8 bits;  conditional E-value: 0.00097
                    EETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHirtH 23 
                     C++Cgk F++   Lk+H+ tH
  KWMTBOMO02474 268 MCDVCGKGFTTAVILKTHLETH 289
                    5*******************99 PP

  == domain 5  score: 10.1 bits;  conditional E-value: 0.015
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    ++C+ Cg++F ++  L +H  + H
  KWMTBOMO02474 297 FTCEQCGRKFLTQTVLHTHVARrH 320
                    89*****************99988 PP

  == domain 6  score: 23.5 bits;  conditional E-value: 7.8e-07
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y C++C+++F +k+nL +H+ +H
  KWMTBOMO02474 325 YICHVCDQPFIDKYNLAQHLIRH 347
                    89*******************99 PP