Silkworm Genome Informatics Database

Gene

KWMTBOMO01119

Pre Gene Modal

BGIBMGA007439

Annotation

PREDICTED:_zinc_finger_protein_141-like_isoform_X2_[Bombyx_mori]

Location

Bomo_Chr3(-):2547479-2559551 View in EpiBrowser

Full name

Zinc finger protein 585B

Transcription factor

zf-C2H2

Location in the cell

Nuclear Reliability : 2.94

CDS

ATGATGTATTTTTGTTGTGTAAAAGGATGTCAAAACAACAATAAGAACACGAGGAAAGAATCAGATTCCATCATAGCTTTTCACAAGTTCCCTACGAATTCAGTTTTGAGAGCGAAATGTCTGAATGCAATAGGTCGACCAAACTGGGACCCTCCAAGTTACACTCGAATTTGTAGTGAGCACTTTGATCATTTTATAAATGAAACTAATGGAACAGATCAGAAAAACGATACTCTTCTTATGAAGGATATACCATCTGTAACTGAATTTGATGCCAGAAATGTAGAGGTCTGCTGTTTATGTTTAGCAAATGATGTTAAAATGCATAGTACTCTACATGGAAGATTAAAGACTGAAATTGAACACATACTGACTTTAACTGATAAGTCAGATATGAATGGGTTCCCGCAGTTTGTATGTTATATGTGTGCCATTGATCTTCATAAATGTTGCCAGTTCATTGAAAAGTGTTTGTTAACACAGGCAACATTACTTGATGTATTTGCACATAATGGAGAGGTTACTGAAAAACTAATAAAAAATGTAGATCGAAAACAATTGAAACTAAACAAATCACTATCGATTCATAAACAGACCTGTGTTATAGAATGCAGTTATGGAAATGAACTTGCACCAATTAAATTTGATTCAAAATTAGAAGATGAAGAAAATACATGTAAAATTGAATTGAATGAGAATATACAAAATAATATCAAATTGGAAAAGGAAATTGACTTGGTCAGCATTGTTAAAAGTCCAAAGAAAGATGACACAGGTGTCAGTGATGATGGAGCAATGAGATATGAAGATAGTGAAGATGATTATGTAGATTCGGATTGTAGTGATGATAAAACATTGAGCGCGTTGAAGAAAACTGCTAATGCTGCTGAAGTTAAGAATGATAAGAAATTAAAGGACAAAGTGACGCGACGAAAAAAATTGCTTAAAAGAAGTAAAGGGGATTTAACCGAACGAGAATTAAAAATGCAAGAATATTTCAATATCGTGAAGTTGTCTCTCCAGGAGCAAATAGACGATTGGAACCGCAAGTTCACTACGCGTCCGCCCACCGGCGACACAGTGTACCAGTGCGAGACGTGCACCAAGCAGTTCACGCACATGAAGACTTACAAAGTACATACACGTTGCCACGATTCGAGTCGTGGTAAAGCAGAGTGTCCTGTGTGTAAGCTTCGATTCAAGAGTGAAGCTTCCGCGGACTCGCACAGGCGGCACACACACGAGAAGAAGTTCCATTGCAAAAGTTGCTTCAAAGCTTTTAGTAATGTGGCCACAGCAAAGAAACATCAGCTGTTTCACTCCGGGCTGAACTGTTCGTCGAATGTGTACACAGCGCAGAGTAAAGTTCCGGACGAGTACACGTGCACTCGCTGCGGCATCGCGTGCGGCCACCGGCAGGGCCTGCAGCTGTACGCGATCAGCGCGCACGCCGCTCTCACGGAAACAAAAGGCGATGAATCTTGTCGCTGCGAACCCTGCGGTATCGACTTCGCCTCAGAGGATGCGCGAAGAGTTCACTTCCAAACTTCCAGCCGACACAAAAGTAAACCAGGGAAGACCGACGGAAAGCCCTTTGAATTAGATGAGAGTAAGACATGCAAGAGATGCGGCACGGAGTTCGGCACACGGAGCGAACTCAACTTGCACGTAAAGGCTCAACATCGCAGACCCTACATGAAGCAACCGGGAGAGACTTACCCCACCAACTGTGAGCACTGTGGGAAAGCAGTAAACAGCCGCCGGGAACATTGGTGGCACACATTCAAGGAACACCCTGCCGAAAGGGATTCATATCGACGAGTCATTACCGCCATTTGTGATACGTGCGGGAAAGGATTCCAAAACAAAACAATTTTACGTATCCACGAGCTACGTCACGCGTCTCCGTCGGTGCGGTGCGACGAGTGCGGGCGCGCGTTCTACGACAAGTACGCACTGGCGCGGCACGCACACACGCACACGCGGGCGCGTCCGTTCGTGTGCACGCACTGCGGACAGACCTTCACGCTGCGCACCAACCTCAACCGCCACGCCAAGCCCACCTACGACAAGTGCGCACTGGCGCGGCACGCACACACGCACACGCGGGCGCGTCCGTTCGTGTGCACGCACTGCGGACAGACCTTCACGCTGCGCACCAACCTCAACCGCCACGCCAAGCCCACCTACGACAAGTGCGCACTGGCGCGGCACGCACACACGCACACGCGGGCGCGTCCGTTCGTGTGCACGCACTGCGGACAGACCTTCACGCTGCGCACCAACCTCAACCGCCACGCCAAGCCCACCTACGACAAGTGCGCACTGGCGCGGCACGCACACACGCACACGCGGGCGCGTCCGTTCGTGTGCACGCACTGCGGACAGACCTTCACGCTGCGCACCAACCTCAACCGCCACGCCAAGCCCACCTACGACAAGTACGCACTGGCGCAGCACGCACACACGCACACGCGGGCGCGTCCGTTCGTGTGCACGCACTGCGGACAGACCTTCACGCTGCGCACCAACCTCAACCGCCACGCCAAGCCCACCTACGACAAGTGCGCACTGGCGCGGCACGCACACACGCACACGCGGGCGCGTCCGTTCGTGTGCACGCACTGCGGACAGACCTTCACGCTGCGCACCAACCTCAACCGCCACGCCAAGCCCACCTACGACAAGTACGCACTGGCGCAGCACGCACACACGCACACGCGGGCGCGTCCGTTCGTGTGCACGCACTGCGGACAGACCTTCACGCTGCGCACCAACCTCAACCGCCACGCCAAGCCCACCTACGACAAGTGCGCACTGGCGCGGCACGCACACACGCACACGCGGGCGCGTCCGTTCGTGTGCACGCACTGCGGACAGACCTTCACGCTGCGCACCAACCTCAACCGCCACGCCAAGGTGCACTCGAACGTGGCGGCCTACGAGTGCTCGATGTGCGGCAAGAAGTTCAAGTACTCGACGAGCCGCAACCTGCACATCCGCACCGTGCACTACAAGCAGCCGCCGCCGCCTCGCAAGAAGCGCGCCAAGAATGTAGAACAACCAGAATTCAAGTTGTAA

Protein

MMYFCCVKGCQNNNKNTRKESDSIIAFHKFPTNSVLRAKCLNAIGRPNWDPPSYTRICSEHFDHFINETNGTDQKNDTLLMKDIPSVTEFDARNVEVCCLCLANDVKMHSTLHGRLKTEIEHILTLTDKSDMNGFPQFVCYMCAIDLHKCCQFIEKCLLTQATLLDVFAHNGEVTEKLIKNVDRKQLKLNKSLSIHKQTCVIECSYGNELAPIKFDSKLEDEENTCKIELNENIQNNIKLEKEIDLVSIVKSPKKDDTGVSDDGAMRYEDSEDDYVDSDCSDDKTLSALKKTANAAEVKNDKKLKDKVTRRKKLLKRSKGDLTERELKMQEYFNIVKLSLQEQIDDWNRKFTTRPPTGDTVYQCETCTKQFTHMKTYKVHTRCHDSSRGKAECPVCKLRFKSEASADSHRRHTHEKKFHCKSCFKAFSNVATAKKHQLFHSGLNCSSNVYTAQSKVPDEYTCTRCGIACGHRQGLQLYAISAHAALTETKGDESCRCEPCGIDFASEDARRVHFQTSSRHKSKPGKTDGKPFELDESKTCKRCGTEFGTRSELNLHVKAQHRRPYMKQPGETYPTNCEHCGKAVNSRREHWWHTFKEHPAERDSYRRVITAICDTCGKGFQNKTILRIHELRHASPSVRCDECGRAFYDKYALARHAHTHTRARPFVCTHCGQTFTLRTNLNRHAKPTYDKCALARHAHTHTRARPFVCTHCGQTFTLRTNLNRHAKPTYDKCALARHAHTHTRARPFVCTHCGQTFTLRTNLNRHAKPTYDKCALARHAHTHTRARPFVCTHCGQTFTLRTNLNRHAKPTYDKYALAQHAHTHTRARPFVCTHCGQTFTLRTNLNRHAKPTYDKCALARHAHTHTRARPFVCTHCGQTFTLRTNLNRHAKPTYDKYALAQHAHTHTRARPFVCTHCGQTFTLRTNLNRHAKPTYDKCALARHAHTHTRARPFVCTHCGQTFTLRTNLNRHAKVHSNVAAYECSMCGKKFKYSTSRNLHIRTVHYKQPPPPRKKRAKNVEQPEFKL

Similarity

Belongs to the krueppel C2H2-type zinc-finger protein family.

Keywords

Complete proteome Metal-binding Nucleus Reference proteome Repeat Transcription Transcription regulation Zinc Zinc-finger

Feature

chain Zinc finger protein 585B

Uniprot

A0A2H1WDF0 F6Z8R2 A0A0G2L575 A0A2K6R553 G7PXE2 G7NMV4 + More
A0A096N7A1 A0A2K5L487 A0A2K5IWJ0 A0A2K5EPH1 A0A2K6V8L7 A0A1S3WUA2 A0A087XJR5 A0A2K6EWB9 A0A2K5YU94 A0A2K5S4C6 U3FT22 A0A2K6E9Q7 A0A0D9QVY9 B3KT55 E9PQH3 A0A2K6E9R8 Q5RB30 F7A9Y4 A0A3B1J903 H9H6K1 W5LFU2 A0A2D0RZW4

Pubmed

20431018 23594743 25362486 22002653 25243066 14702039 + More
15057824 17495919 25329095

EMBL

ODYU01007811 SOQ50892.1 AAMC01126932 AAMC01126933 AAMC01126934 AAMC01126935 + More
BX855613 CM001294 EHH59516.1 CM001271 EHH29975.1 AHZZ02014245 AYCK01022746 AYCK01022747 GAMP01002034 JAB50721.1 AQIB01134521 AK094989 BAG52967.1 AC012309 CR858827

Proteomes

UP000008143 UP000000437 UP000233200 UP000009130 UP000028761 UP000233060 + More
UP000233080 UP000233020 UP000233220 UP000079721 UP000028760 UP000233160 UP000233140 UP000233040 UP000233120 UP000029965 UP000005640 UP000001595 UP000002280 UP000018467 UP000221080

PRIDE

B3KT55 E9PQH3 Q5RB30

Pfam

PF05485   THAP        + More
PF00096   zf-C2H2
PF01352   KRAB

Interpro

IPR006612   THAP_Znf        + More
IPR036236   Znf_C2H2_sf
IPR013087   Znf_C2H2_type
IPR038441   THAP_Znf_sf
IPR012934   Znf_AD
IPR003656   Znf_BED
IPR001909   KRAB
IPR036051   KRAB_dom_sf

SUPFAM

SSF57667 SSF57667 + More
SSF109640 SSF109640

Gene 3D

3.30.40.180

CDD

cd07765 KRAB_A-box

ProteinModelPortal

A0A2H1WDF0 F6Z8R2 A0A0G2L575 A0A2K6R553 G7PXE2 G7NMV4 + More
A0A096N7A1 A0A2K5L487 A0A2K5IWJ0 A0A2K5EPH1 A0A2K6V8L7 A0A1S3WUA2 A0A087XJR5 A0A2K6EWB9 A0A2K5YU94 A0A2K5S4C6 U3FT22 A0A2K6E9Q7 A0A0D9QVY9 B3KT55 E9PQH3 A0A2K6E9R8 Q5RB30 F7A9Y4 A0A3B1J903 H9H6K1 W5LFU2 A0A2D0RZW4

PDB

5V3M E-value=3.30865e-20, Score=246

KEGG

101737715 no KO assigned | (RefSeq) zinc finger protein 14-like

GO

GO:0003677 GO:0005634 GO:0008270 GO:0046872 GO:0006355 GO:0003676 GO:0008152 GO:0006334 GO:0003779 GO:0016021

Subcellular location

Nucleus

Length:

1026

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00016

Exp number, first 60 AAs:

0.00016

Total prob of N-in:

0.00002

outside

1 - 1026

Pi

224.945355

Theta

197.001217

Tajima's D

0.530097

CLR

1449.236848

CSRT

0.52132393380331

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics