Gene

KWMTBOMO00829

Pre Gene Modal

BGIBMGA009688

Annotation

putative_nuclear_hormone_receptor_HR3_[Papilio_xuthus]

Location

Bomo_Chr2(-):3730012-3757710      View in EpiBrowser

Transcription factor

THR-like

Location in the cell

Nuclear   Reliability : 4.267

CDS

ATGAATAACAACCAGTTTCCGGAGCTGTTTGGATCTCAATGGCCTCCGGACCAGCACGGGGGCCACTCCTCGGCCTCGACGATGCTGCATCAGCAGTCGCTTCCTCAAGGAATGCAGCTGAAAAGGGAACCTCACACCGACATCGGTGTCGGGATGCACAATCAAATGGGAATGGACATCACTTCCGGTTCCGTAGCGGACAGCACCTCGCCGCCGCCGGGCAGCAGCGACGGCATCTTCGGCTCATCGATATCGGGCATGTTCATGGATAAAAAAGCCGCTAATTCTATAAGAGCCCAAATCGAGATAATACCGTGCAAGGTATGCGGAGATAAATCGTCGGGGGTGCACTATGGCGTGATCACCTGCGAGGGATGCAAAGGATTCTTCAGACGATCCCAGAGCACAGTGGTGAACTACCAGTGTCCTCGCAACAAGGCCTGCGTCGTGGACAGGGTCAACCGCAACCGATGCCAGTACTGCAGACTACAGAAGTGCCTCAAACTCGGCATGAGTCGTGATGCCGTCAAATTCGGTCGCATGTCGAAGAAGCAGCGGGAGAAGGTCGAGGACGAGGTCAGATACCACAAGGCGCAGATGCGGGTGCAGGCTGATGCGGCGCCGGACTCCGTGTACGACGCCCAGCAGCAGACGCCCAGCTCGAGCGACCAGTTCCACGGGCATTATAACAGCTACCCAGGATACGGGTCGCCGTTGTCTTCGTATGGCTACAACAACGCCGGGCCAGCGCTACCCTCGAACATGAGCGGGATGCAGCCGCAGCCCCCAGCTCAGCCCCCGTACGAGGTCTCAGGCGACTACGTGGACTCCACAACGACATACGAGCCCAAACAGACAGGGTTCTTGGACGCAGACTTCATAAGTCACGAGGAGCGCCAGAAATCGACCATCGTCCGACCGTCGACCGCGACCACGACCGCCACCACGACCACGATCCGACCATCGGCCATAAACGAGCTGCCCAGATCACGGCTGCAGGAGTACGACCGGTACGACGACCGGATTCAGTCGCCGTCAGGGGTCATCAGCATTAAGCAGGAGATCAAGCCTGAGACTTCAATGGGCGTCGATAACTTGGTGGCGAGCTACGTCGACTCGACAACGTTCCTACACAGTCCTTCTAACATGCAAAACAGCCCGATGGACATACAGAACACGGTGCTCGTCAGCGGCCAGAGCTCCGTCTCATTGACCAGCGAGGACTTGAGTCCTGATGATTTGACTTCGAGCAGCGGCCACGAGAGGCTAATGGACCCCATGAACATGAACATGTCCGCCATGGGAATGGTGAACCCCAATATTGTGTCAACGAGAAGACACCACGGCGCTAATAATTCTAATGACGATATGCCTTTGGAGGGTGACATTAGCAAGGTGCTAGTGAAAAGTTTGACAGAGGCGCACGCGAATACAAATCCGAAGTTGGATTACATACATGAGATGTTCGGCAAGCCCCAGGATGTTTCTAAGCTCTTGTTCTATAACTCCATGACCTACGAGGAGATGTGGTTGGACTGCGCCGACAAGCTCACCGCGATGATCCAGAACATCATTGAGTTCGCGAAACTCATACCTGGTTTCATGAAGCTCACCCAGGACGATCAAATACTGCTGCTTAAATCAGGTTCGTTCGAGTTGGCGATCGTCCGTTTGTCGCGGCTAATCGACGTGAACCGCGACCAGGTGCTCTACGGAGACGTGGTGCTACCCGTGCGGGAATGCGTGCACGCGCGCGATCCCAGAGACGTAGCTCTGGTGCAAGGAATCTTTGAGGCTGCCAAGAGCATCGCTCGACTGAAGCTGACCGAGACTGAACTGGCTCTATACCAGAGCCTTGTGCTCCTGTGGCCAGAGCGCCACGGCGTGATGGGCAACTCGGAGATCAGGTGTCTCTTCAATATGTCCATGTCGGCGATGCGGCATGAGATCGAGGTCAACCACGCGCCGCTCAAGGGTGACGTCACCGTGCTGGATACACTCCTGGCCAAGATACCCACTTTCAGAGATCTCTCCCTGATGCACCTCGGAGCGCTGAGCCGTTTCAAAGCGACGCATCCGCATCACGTTTTCCCAGCTTTATACAAAGAATTGTTCTCTTTAGACAGTGTTTTAGATTACACGCACGGATAA

Protein

MNNNQFPELFGSQWPPDQHGGHSSASTMLHQQSLPQGMQLKREPHTDIGVGMHNQMGMDITSGSVADSTSPPPGSSDGIFGSSISGMFMDKKAANSIRAQIEIIPCKVCGDKSSGVHYGVITCEGCKGFFRRSQSTVVNYQCPRNKACVVDRVNRNRCQYCRLQKCLKLGMSRDAVKFGRMSKKQREKVEDEVRYHKAQMRVQADAAPDSVYDAQQQTPSSSDQFHGHYNSYPGYGSPLSSYGYNNAGPALPSNMSGMQPQPPAQPPYEVSGDYVDSTTTYEPKQTGFLDADFISHEERQKSTIVRPSTATTTATTTTIRPSAINELPRSRLQEYDRYDDRIQSPSGVISIKQEIKPETSMGVDNLVASYVDSTTFLHSPSNMQNSPMDIQNTVLVSGQSSVSLTSEDLSPDDLTSSSGHERLMDPMNMNMSAMGMVNPNIVSTRRHHGANNSNDDMPLEGDISKVLVKSLTEAHANTNPKLDYIHEMFGKPQDVSKLLFYNSMTYEEMWLDCADKLTAMIQNIIEFAKLIPGFMKLTQDDQILLLKSGSFELAIVRLSRLIDVNRDQVLYGDVVLPVRECVHARDPRDVALVQGIFEAAKSIARLKLTETELALYQSLVLLWPERHGVMGNSEIRCLFNMSMSAMRHEIEVNHAPLKGDVTVLDTLLAKIPTFRDLSLMHLGALSRFKATHPHHVFPALYKELFSLDSVLDYTHG

Similarity

Belongs to the nuclear hormone receptor family.

Uniprot

H9JJI7   A0A194R532   A0A194PU94   A0A212FIK2   A0A2H1WWI1   O02643   + More
A0A336KVR0   A0A336L080   A0A1Y1KFZ3   Q0KFU8   A0A1Y1KGJ1   Q0KFU9   E0VB70   A0A1J1IWS4   A0A310SQU2   A0A1Y1KGK1  

Pubmed

19121390    26354079    22118469    9131779    28004739    17258436    + More
20566863   

EMBL

BABH01017503    BABH01017504    BABH01017505    KQ460890    KPJ10971.1    KQ459593    + More
KPI96548.1    AGBW02008380    OWR53541.1    ODYU01011594    SOQ57429.1    U63929    AAB54059.1    UFQS01001170    UFQT01001170    SSX09351.1    SSX29253.1    SSX09350.1    SSX29252.1    GEZM01086390    GEZM01086385    JAV59488.1    AM259129    CAJ90622.1    GEZM01086387    GEZM01086386    JAV59491.1    AM259128    CAJ90621.1    DS235022    EEB10626.1    CVRI01000061    CRL04012.1    KQ759900    OAD62016.1    GEZM01086388    GEZM01086383    GEZM01086382    GEZM01086381    GEZM01086380    GEZM01086379    GEZM01086378    GEZM01086377    JAV59501.1   

Proteomes

UP000005204    UP000053240    UP000053268    UP000007151    UP000009046    UP000183832    + More

PRIDE

H9JJI7   

Pfam

PF00105   zf-C4        + More
PF00104   Hormone_recep

Interpro

IPR000536   Nucl_hrmn_rcpt_lig-bd        + More
IPR035500   NHR-like_dom_sf       
IPR001723   Nuclear_hrmn_rcpt       
IPR001728   ThyrH_rcpt       
IPR013088   Znf_NHR/GATA       
IPR001628   Znf_hrmn_rcpt       

SUPFAM

SSF48508   SSF48508       

Gene 3D

1.10.565.10     3.30.50.10    

ProteinModelPortal

H9JJI7   A0A194R532   A0A194PU94   A0A212FIK2   A0A2H1WWI1   O02643   + More
A0A336KVR0   A0A336L080   A0A1Y1KFZ3   Q0KFU8   A0A1Y1KGJ1   Q0KFU9   E0VB70   A0A1J1IWS4   A0A310SQU2   A0A1Y1KGK1  

PDB

1N4H     E-value=1.19421e-30,     Score=335

KEGG

692562    K14033 nuclear receptor subfamily 1 group F member 4 | (RefSeq) Hr3, Bhr3; hormone receptor 3

GO

GO:0005634   GO:0043565   GO:0003707   GO:0004879   GO:0008270   GO:0003700   GO:0003677   GO:0006355   GO:0043401   GO:0004887   GO:0016021  

Subcellular location

Nucleus  

Length:

716

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.000840000000000001

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00005

outside

1  -  716

 

 

Pi

205.512034

Theta

179.996406

Tajima's D

0.757905

CLR

0.526012

CSRT

0.591270436478176

Interpretation

Uncertain