SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO00818
Annotation
PREDICTED:_RNA-directed_DNA_polymerase_from_mobile_element_jockey-like_[Plutella_xylostella]
Location in the cell
Mitochondrial   Reliability : 1.868 Nuclear   Reliability : 1.838
 

Sequence

CDS
ATGGACTTAGAGGCCACGCAGTTGCGTACGCATACGCAGTCTCCTTCAATCCCAGCTGCTCCAGCTACCGTCCCAAGAACATCGTACGCGGCCAAAGCCGCAGTTCGTCCTCCAATCCGTTCCATCCCTCCAAGAGTTACAGTCCCAACTACATCAGCCACTCCTACCCCAGGCACTAGGGGCCGCGCCGCAGAGCTCAAACGCCACCCACCTATATTGGTGGAGGTGCTCCCTAATTGGCCTAGCCACATGGCCGCCATTAGGGAGCGACTAGGCCGAGCTCCTTCGGTGAGGCCCCATGGGTCCGGTTTTCGATTCCTGCCTACGTCCGTGGAGGAATACAGGGCGGTCCAGTCGTACCTGTCGGGGGCCTCCGCCGCGGACAGTACCATTAAGTGGTACTGTTACGCAATGTCGGAGGACATCCCCACTAAGGTAGCGATTCGGGGCCTCCCTGCCGACACGGACTCGGCAGCAGTCATCAACGCCCTCAAAGAACTGGGATTCCCGGCGCGCTATGCCCGGTGTATAGAGGCCAAGAGGGGTAGGCCGAGCTGCATTTTTCATGTAGCTCTAGACCACCTCTCGAAGGTCGACCTCGCCCGCTTGTATGCAGTCAGTGAACTGCTATACTTGCCGGGGGTGACGGTTGAAGGTTGGCGTCCCGGCAAGGGTCCTGCGCAGTGTCACCGCTGCCAGGCCTTTGGTCACGCCTCCTACAATTGTCATCGAGCGGTCCGCTGCGTGCGATGTGCAGGTGAGCACGTCGTGGCGGACTGCCCGAGGCCGAGGGAGGGCCCCTTCACCTGTGCAAACTGTGGTAAGGATCATGCCGCCGTCGACAGACGGTGTGTAACCTACCGCAGGAGGCTGAGGATGATGGGGGTAACCGCTCCCCCTCCATTACCACCGGTGCCGCGGCCAAGGGCGAACCCAGTTCCTACTCCCACCGCTGCCCCTTTACCGATCCCCCAAGGGAAGGGTAAGGGGAAGGGAAAATCTTCCCTTCCTCCTTCCCAACCCACACTCCTTCCTACGAATGTGGAGGCCCACGCCGCAGCGGCAACGCTGATGGCGGAGGCTAACCCACCACGTCCTTCCACATCTTCTGCTCCCGTCCCAAGAGCTCCAGCTGTTGCGTCTTCTAAGCAAGTACGCACTACCGGAGGGAAAGCTGCAAGAAACGCAAAGAAAAACAAAAATAAAAAGATCAAAAAAAAGGAGAAGAAACTTGCGGCAAAGGCCCAAGAACAAGCCTTGCAAACCCAAGCCACAGGCAGTACTTCAACTGCCCAACCCAAGCCACAAAAAGAGGCGCCTCAACAAATGGAGGTGGAGTATGTGGAGCCGGAAGAGGCAGTAGCCTCCACCTCCTCTATATTCAGGCCAACAACAAAACCTTCAACTGAAAAGCCCGTAGACCCAACGGCCTCGGGCCCAAATATTCATTCCCTCCCTCCCCGCCCTCAGCGTGAGCGGCGCAGCGGTCGGCAGGCCTCACAACCTGCTGGCTTTGCTGCATGGCTCCTCGCACTGTGGGAGAAATTGTCCGAGGAGTTGCGCATCATCTACTGGAACCCCGACGGGATTAAATCCCGTAAGAACGACCTCTTGATTCTCGCCCGGGAGTACAACCCTGAGGTTGTGCTCCTGGGCGAGACCAAGCTACGTCCTCAGGATGCGTTCAGGATTCCCAACTACTTCATGTACCGACGTGACGAGCTTACCCCTGCCGGGCGGCCGTTCAGGGGCACTGCGGCCCTCGTCAGGCGGGACGTGGTGCATGATCAGTTGGATTTGCTGTCCTTCACATCGACAAGGTCAGTCGGTGTGAGGGTACACACCTCGGGGGGAGATATGCGGATTTACGCCGCGTATAGACCCCCGGGGCCTGAGTTCCACCCTGAGGATATAAGACGGGCCCTGAATTACGACAGCCGCCCAGCTCTGCTGGTCGGGGACCTCAACGCGAAACACGTCGCGTGGGGCTCCCGACTTAACACAGCAGTGGGCAGGCGGCTGTTAGAAGATGCCGATAGGGGCGACTACTCCGTGGTCGGCCCCGACGAACCCACGCACGTCCCGTCCGCCGCGCGATATCAGCCCGATGTACTGGACGTGTGTGTTCATAAGGGGCTACGGTGCCCCGTAACGATCGAGGCACTGTACGACCTGGGTACCCCCCATCTCCCTATCCTGGTGACACTGGGTATGGGGCTCACCCGGGTTGCGACCTCGCCCCTACGACCGAAGGTCGACTGGGAGCTCTTTAAGAGACGACTGGTCGACCTTCCCGTAATTCAGGACCCCAACACCCCTGATGGGGTCGACGACGCGGCGGTCCGCCTTGTCGACTCCATCAGGGGAGCGATCGACCAGGCGACGACTCTTGTGCCCAGCGGCGGGCCCAGAGGTATACTCCCGGCCCATCTGAAAGCGATCATTCGCCGGAAGAGGGGCCTGAGGAGGCTCTGGGCGACAACTCGTTGTCCCAGGATCAAGCGCGAGCTTAATGAGTTGGAAGCGGAGTTGGCGGCGAAGATTAGCTCCTTTCGGGGCTATGCGTGGGAGGAAAGGATTGAGGAGGCCCGTGAGGACCCCTTTTCCGTGTCCCTCCACCGACTTTGCCGCCAGCTCTCAAATCGGCCTGCCCCCACTTGTCCACTTGTGGACGAGAGGGGCAACCGATGCTTCTCGGCTCAGGCCCGCGCCGATGTCCTGGCCGCAATGCTGGAGCGGCAGTTCGCTCCAAATGACTCTGTATCCTCAGAGGCCGCATTCCACCAATCGGTGGAAGAGAGCGTAGCGAACCTACTCTCCTCCCCGGTGCCACCGTTGGGAGATGATGATTTCATCACTCCCAGCGAATTGCGCCTCTCCATCAAGCGGATGAAGAGGCGCAAGGCGCCGGGTGAGGACGGTATTCCCTCCCTCGCATTCTTCCACTTCCCTGAAACGGTCGTGTCATACATGACACGGCTGTTCAATTCCATTCTGTCCACAGGACACTTCCCGGGAATTTGGAAATTGGGCAAGGTCATTGCCTTGCCCAAGCCCGGCAAGGATAGGAGAAATCCCTCCAGTTACCGTCCGATCACCTTGCTGTCGCATGTGGGCAAGTTGTTCGAGCGGCTGCTGCTGAGAAGGGTGTCGCCGCACATCCTTCTCAGACCCGAGCAATTCGGGTTTCGCAGCGGTCACTCGACAACGCTGCAATTGGTCCGAGTTATGCATCACTTGGCGGATCGGTCCAACGCGCGCCAGTACACGGCCGCAGTCTTTCTCGATATCGAGAAGGCCTTCGACCGTGTCTGGCATGCGGGACTGATCTACAAGCTGTTGCAGAACACGGACCTCCAGCACGCCTATGTGCGACTGCTGGGGTCGTACCTGGAGGGAAGATCCTTCCTTGTCGCGGTCGAGGGCGCAAAGTCGTCGGTGCGCCCAGTCACGGCCGGAGTTCCCCAGGGAAGCGTCCTGGCACCAGTCCTCTACGCTCTCTACACCAACGACATTCCCACGCTTGAGGGCAACCTCCAAGCGTGGGAAGCCGACGTGAAGTTGGCGCTGTTTGCCGACGACAGCGCCTACTTCGCGTCATCCAACTTCCCCTCTGCGGCCATTTCGAGGATGCAGAGGCTATTGGACTTACTGCCCCAGTGGCTGGACCGATGGAGGGTCGCGGTCAACGTGGGGAAGACTGCGGCTATCCTCTTCGGTCCAGTCCGCACAACAGTCGTCCCGGGACAGCTCAGTCTCCGTGGCGCTAATGTCGAGTTTAGATCCAGCGTCCGGTACTTGGGGGTCGATATCGACCGGAGTTTGAGGATGACCGCCCACGCCAAATCGGCGTTGGCGGCCGCTCGCTATGCGAGATTCCTCCTCCGGCCGGTGTTAGCCTCCGGGTTGCCGGTCAGGACTAAGCTCGGCATTTATAAGACGTATGTCCGTTCCCGTATCACGTACGCAGCTGCGGCCTGGTATCACCTCATCCCGCAGGTCATGCGGGTGAAGTTACAGGCCCAGCAGAATCTGGCTCTTCGCACGATAGTCGGAGCAGGGCGTTACGTCAGTAATGCCGTAATCGCCCGGGATCTGGATGTGGAGTCGCTCGAGGAGTTCATCCGGAGGCTAGCTCGTAATCTTTACGAGCGGGCTGACGGTGGACCCCACGAGCATCTCCACAATTTAGCTCCCTTGCACGCCAGACCACCTGATGGTCGGGCGCTACCAAGGGAGCTACTAGAACCCCCTTCTATGGTAAGATAG
Protein
MDLEATQLRTHTQSPSIPAAPATVPRTSYAAKAAVRPPIRSIPPRVTVPTTSATPTPGTRGRAAELKRHPPILVEVLPNWPSHMAAIRERLGRAPSVRPHGSGFRFLPTSVEEYRAVQSYLSGASAADSTIKWYCYAMSEDIPTKVAIRGLPADTDSAAVINALKELGFPARYARCIEAKRGRPSCIFHVALDHLSKVDLARLYAVSELLYLPGVTVEGWRPGKGPAQCHRCQAFGHASYNCHRAVRCVRCAGEHVVADCPRPREGPFTCANCGKDHAAVDRRCVTYRRRLRMMGVTAPPPLPPVPRPRANPVPTPTAAPLPIPQGKGKGKGKSSLPPSQPTLLPTNVEAHAAAATLMAEANPPRPSTSSAPVPRAPAVASSKQVRTTGGKAARNAKKNKNKKIKKKEKKLAAKAQEQALQTQATGSTSTAQPKPQKEAPQQMEVEYVEPEEAVASTSSIFRPTTKPSTEKPVDPTASGPNIHSLPPRPQRERRSGRQASQPAGFAAWLLALWEKLSEELRIIYWNPDGIKSRKNDLLILAREYNPEVVLLGETKLRPQDAFRIPNYFMYRRDELTPAGRPFRGTAALVRRDVVHDQLDLLSFTSTRSVGVRVHTSGGDMRIYAAYRPPGPEFHPEDIRRALNYDSRPALLVGDLNAKHVAWGSRLNTAVGRRLLEDADRGDYSVVGPDEPTHVPSAARYQPDVLDVCVHKGLRCPVTIEALYDLGTPHLPILVTLGMGLTRVATSPLRPKVDWELFKRRLVDLPVIQDPNTPDGVDDAAVRLVDSIRGAIDQATTLVPSGGPRGILPAHLKAIIRRKRGLRRLWATTRCPRIKRELNELEAELAAKISSFRGYAWEERIEEAREDPFSVSLHRLCRQLSNRPAPTCPLVDERGNRCFSAQARADVLAAMLERQFAPNDSVSSEAAFHQSVEESVANLLSSPVPPLGDDDFITPSELRLSIKRMKRRKAPGEDGIPSLAFFHFPETVVSYMTRLFNSILSTGHFPGIWKLGKVIALPKPGKDRRNPSSYRPITLLSHVGKLFERLLLRRVSPHILLRPEQFGFRSGHSTTLQLVRVMHHLADRSNARQYTAAVFLDIEKAFDRVWHAGLIYKLLQNTDLQHAYVRLLGSYLEGRSFLVAVEGAKSSVRPVTAGVPQGSVLAPVLYALYTNDIPTLEGNLQAWEADVKLALFADDSAYFASSNFPSAAISRMQRLLDLLPQWLDRWRVAVNVGKTAAILFGPVRTTVVPGQLSLRGANVEFRSSVRYLGVDIDRSLRMTAHAKSALAAARYARFLLRPVLASGLPVRTKLGIYKTYVRSRITYAAAAWYHLIPQVMRVKLQAQQNLALRTIVGAGRYVSNAVIARDLDVESLEEFIRRLARNLYERADGGPHEHLHNLAPLHARPPDGRALPRELLEPPSMVR

Summary

Uniprot
ProteinModelPortal
PDB
6AR3     E-value=9.78009e-05,     Score=114

Ontologies

GO

Topology

Length:
1422
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.02998
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00008
outside
1  -  1422
 
 

Population Genetic Test Statistics

Pi
332.616224
Theta
176.406565
Tajima's D
2.740263
CLR
114.029471
CSRT
0.964651767411629
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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