Gene

KWMTBOMO00654

Pre Gene Modal

BGIBMGA003870

Annotation

PREDICTED:_cycle_like_factor_b_isoform_X1_[Bombyx_mori]

Location

Bomo_Chr1(+):20302924-20326567      View in EpiBrowser

Transcription factor

bHLH

Location in the cell

Nuclear   Reliability : 3.893

CDS

ATGCCGAAGGAGATCGATGAGCGGGGCTACCTCAGGATGACGCAGGACTGTGCGAACCCGAGTGCGATACAGGCGTATGAGATGACACCGGAAGGGGGCGTGGGGTTGGGCGGCGCGTGCGCCGACTCGGCCGGCGCCCTCATCACCCCGCACCCTCCCCTTCATCATCCAGTGCCGCAGACCTCACAGCAACTCCATCATGATCCGCGGAAAACAAAACCCAATCACTACGTTCCTGAAAACTATGAGATATCGGCGTGCGACTCGCAGCGCCAGTCTCCACACGGACACACGCCGCGGACTCGGACCAACAGTACTCGTAAACGGAAACCATCGTCCTATGGAACTGGAAGCGCTTATGATGACGACGAAGAAGATTCAAGATCCACAACAACTACAACCACGGCGACCACGCGCGGCACTCCCGACAAGAAACAAAATCATAGCGAGATCGAAAAACGGCGACGTGATAAAATGAACACTTTTATATCGGAACTGAGCGCCATGATACCGATGTGCGGAGCCATGGCTCGGAAGCTGGACAAGCTGACAGTCCTCCGCATGGCCGTTCAACACTTGAGGACGGTGCGCGGCGCGCTCTCGGCCTGCCCCTTGACGGCCCGGCCCTGTCCCACTTACCTCACTGAGCGAGAACTAAACGCACTGATACTCCAGGCGGCTCACGACTGCTTTTTGCTCGTCGTGGGATGCGATCGCGGCAGGTTACTTTACGTCTCGGCTTCGGTCAAAAATATACTTCATTACGATCAATCGGAACTATTAGGCCAGAGCCTGTTCGACATTTTACATCCAAAGGACGTCGCTAAAGTAAAGGAACAACTATCATCGTCAGACCTTAGTCCACGAGAAAGACTCATCGACGCAAAAACGATGTTGCCATTGAAAGCGGACGTAGTAGCCGGCGCGTCCAGGTTCGGTCCGGGGGCACGTCGGTCGTTCTTCTGTCGGATCAAGTGCAAATTAGACACAGAAGAAGTCGAAACTCCCCCGCAGCCAGTCAAGGAGGAGGTGGAGCCAGTGGCCAAGATGCGGAAGAAACACTCTCACGAGAAAAAATACTGCGTCGTGCAATGCACAGGTTATTTAAAATCGTGGGCGCCAACGAAGATGTGTGACGGTGCCAGTGCGGAAGGGGGAGAGGAGAGTGAAGCGTGCAACATGTCGTGTCTAGTGGCAGTGGGCCGAACCTTGGGTGGTTTAGCTCCCACCACGAACTCTCCGACATCCATGCCTCAAACCAGACACCTGCAATACGTCTCACGACACACTACCGACGGGAAATTCTTGTTTGTTGATCAGCGGGTGACTCTCGCGCTAGGATTCTTGCCCCAGGAGTTGCTGGGCACTAGTCTGTACGAGTACGTGCACGGGCCGGAGCTGGGCGCCGTGGCCCGCACGCACAAGGCCGCGCTGCTGCAGCGCGACGCGCTCCACACCCCGCCCTACTGCTTCCGCAGGAAGAACGGCTCGATGGCCAGAATACAAACCCACTTCAAACCGTTCAAAAATCCGTGGACGAAAGACGTCGAGTGCTTAGTGGCCAACAACACCGTCGTGTCGGAGTCCCAGGTGTCGCTGCAGCAAGACACGACGCAAGCAGCGTTTGATATTTACAAGCAAAAATCGGACGTCGAGATGCAGCGCCTCATAGACTCGCAAGTCGAGTCCCATAAGATCGGCAGCGCCATCGCCGAGGAGGCTCTGCGGCGGTCGTCGACTGATTACTCGCCCGACCTGCCGACCGAGTTGCTGCAAGACGCCGTCTTCAATCAGCAGTTTTCTCCGCTGCAAGTTGCGCTAGTGGACAACATCCTCGGGACCGACAGTAGCACTTCAAATCAGGTTCGCAACAACGTGCCCCTGAGTTCAGTGAGCTCCATCAGCCCGCCGGCGCCGTCGGTGGAAGAGACGACTCTGTGCGACACCCCCCCGCCGCCTTCCCCCCCGCTGCCTTCCCCCCCGCTGCCGCCCCTGGTCATGGACGGCAATGGTGAAGCAGCAATGGCAGTTATCATGAGTCTTCTAGAAGCGGACGCAGGTCTCGGAGGGCCGATCAATTTTTCAGGTCTTCCTTGGCCTTTGCCCTGA

Protein

MPKEIDERGYLRMTQDCANPSAIQAYEMTPEGGVGLGGACADSAGALITPHPPLHHPVPQTSQQLHHDPRKTKPNHYVPENYEISACDSQRQSPHGHTPRTRTNSTRKRKPSSYGTGSAYDDDEEDSRSTTTTTTATTRGTPDKKQNHSEIEKRRRDKMNTFISELSAMIPMCGAMARKLDKLTVLRMAVQHLRTVRGALSACPLTARPCPTYLTERELNALILQAAHDCFLLVVGCDRGRLLYVSASVKNILHYDQSELLGQSLFDILHPKDVAKVKEQLSSSDLSPRERLIDAKTMLPLKADVVAGASRFGPGARRSFFCRIKCKLDTEEVETPPQPVKEEVEPVAKMRKKHSHEKKYCVVQCTGYLKSWAPTKMCDGASAEGGEESEACNMSCLVAVGRTLGGLAPTTNSPTSMPQTRHLQYVSRHTTDGKFLFVDQRVTLALGFLPQELLGTSLYEYVHGPELGAVARTHKAALLQRDALHTPPYCFRRKNGSMARIQTHFKPFKNPWTKDVECLVANNTVVSESQVSLQQDTTQAAFDIYKQKSDVEMQRLIDSQVESHKIGSAIAEEALRRSSTDYSPDLPTELLQDAVFNQQFSPLQVALVDNILGTDSSTSNQVRNNVPLSSVSSISPPAPSVEETTLCDTPPPPSPPLPSPPLPPLVMDGNGEAAMAVIMSLLEADAGLGGPINFSGLPWPLP

Uniprot

Q8N0R5   H9J2Y3   A0A2S1ZDB6   A0A2A4JQ56   A0A1U9XQN3   A0A2W1BM79   + More
A0A2S0DDS3   Q3ZTR4   A0A212EKE6   A0A194QYE8   Q6VRU5   Q2PRP1   A0A0F7IGS0   A9XCF1   A0A2J7Q3V6   A0A1L8DM25   A0A1L8DMD6   Q05J77   A0A0M8ZQ63   K7IW03   E2A3F0   A0MH07   E2B7K2   A0A087ZYH3   A0A026W1Y8   A0A151IRV0   A0A1J1IIJ1   A0A195EX82   A0A1Y1NEK2   A0A151WT58   A0A195BTR2   A0A3L8DNB8   A0A158NNS1   A0A1B0DPF6   A1IM63   A0A154P0Z1   A0A1J1ILV8   T1H956   E0W1Z5   A0A310SFD3   A0A1L5YQJ1   K4F2M9   A0A084W480   Q17JB2   Q17JB1   A0A1Q3FQ15   A0A1Q3FPV7   A0A1Q3FPW8   A0A1Q3FPQ4   A0A1Q3FPM4   A0A1B0YZI3   U5EXM2   A0A146LWP6   A0A286Q1C4   A0A2I6BPZ8   A0A146LYC2   T2C8X8   A0A2S0X9U9   U5NDP5   A0A2P6KD60   M4HZ37   A0A2T7PK89  

Pubmed

12628385    19121390    28756777    28674826    16332522    22118469    + More
26354079    12869551    17368476    20075255    20798317    17069657    24508170    28004739    30249741    21347285    18082762    20566863    23012454    24438588    17510324    27341138    26823975    29255161    24076244    29655930    24075994   

EMBL

AB073712    BAB91178.1    BABH01031193    BABH01031194    BABH01031195    BABH01031196    + More
BABH01031197    MF374804    AWK22768.1    NWSH01000799    PCG74131.1    KY682108    KY825136    AQZ26709.1    AVE16219.1    KZ150031    PZC74724.1    KY940303    ASK39990.1    AY364478    AAR13012.1    AGBW02014274    OWR41954.1    KQ460953    KPJ10324.1    AY330487    AAR14937.1    DQ305400    ABC18168.2    KP147946    AKG92783.1    EF174304    ABO86538.1    NEVH01018428    PNF23249.1    GFDF01006561    JAV07523.1    GFDF01006560    JAV07524.1    AB278116    BAF35030.1    KQ435912    KOX68860.1    GL436428    EFN72014.1    DQ841151    ABI21880.1    GL446181    EFN88377.1    KK107485    EZA50085.1    KQ981124    KYN09334.1    CVRI01000054    CRL00055.1    KQ981953    KYN32489.1    GEZM01009202    JAV94626.1    KQ982766    KYQ50981.1    KQ976417    KYM89821.1    QOIP01000006    RLU21940.1    ADTU01021739    ADTU01021740    ADTU01021741    ADTU01021742    AJVK01008090    AJVK01008091    AB289690    BAF44540.1    KQ434785    KZC05014.1    CRL00054.1    ACPB03010320    ACPB03010321    ACPB03010322    DS235873    EEB19589.1    KQ766175    OAD53726.1    KX602315    APP94024.1    JN573265    AEX32872.1    ATLV01020285    KE525297    KFB45024.1    CH477233    EAT46793.1    EAT46794.1    GFDL01005421    JAV29624.1    GFDL01005527    JAV29518.1    GFDL01005493    JAV29552.1    GFDL01005553    JAV29492.1    GFDL01005528    JAV29517.1    KX014725    ANO53974.1    GANO01000885    JAB58986.1    GDHC01007030    JAQ11599.1    KX238952    ANW48377.1    KY922996    AUI80367.1    GDHC01006035    JAQ12594.1    KC885968    AGV28715.1    MG280774    MF175153    AWC08576.1    AXF35705.1    KF316926    AGX93014.1    MWRG01015605    PRD24247.1    JQ670886    AFV39705.1    PZQS01000003    PVD33849.1   

Proteomes

UP000005204    UP000218220    UP000007151    UP000053240    UP000235965    UP000053105    + More
UP000002358    UP000000311    UP000008237    UP000005203    UP000053097    UP000078492    UP000183832    UP000078541    UP000075809    UP000078540    UP000279307    UP000005205    UP000092462    UP000076502    UP000015103    UP000009046    UP000030765    UP000008820    UP000245119   

PRIDE

Q8N0R5    H9J2Y3   

Pfam

PF00010   HLH        + More
PF00989   PAS
PF08447   PAS_3
PF13426   PAS_9

Interpro

IPR013767   PAS_fold        + More
IPR035965   PAS-like_dom_sf       
IPR011598   bHLH_dom       
IPR000014   PAS       
IPR001067   Nuc_translocat       
IPR036638   HLH_DNA-bd_sf       
IPR001610   PAC       
IPR013655   PAS_fold_3       

SUPFAM

SSF47459   SSF47459        + More
SSF55785   SSF55785       

Gene 3D

4.10.280.10    

CDD

cd00130  PAS
cd00083  HLH

ProteinModelPortal

Q8N0R5   H9J2Y3   A0A2S1ZDB6   A0A2A4JQ56   A0A1U9XQN3   A0A2W1BM79   + More
A0A2S0DDS3   Q3ZTR4   A0A212EKE6   A0A194QYE8   Q6VRU5   Q2PRP1   A0A0F7IGS0   A9XCF1   A0A2J7Q3V6   A0A1L8DM25   A0A1L8DMD6   Q05J77   A0A0M8ZQ63   K7IW03   E2A3F0   A0MH07   E2B7K2   A0A087ZYH3   A0A026W1Y8   A0A151IRV0   A0A1J1IIJ1   A0A195EX82   A0A1Y1NEK2   A0A151WT58   A0A195BTR2   A0A3L8DNB8   A0A158NNS1   A0A1B0DPF6   A1IM63   A0A154P0Z1   A0A1J1ILV8   T1H956   E0W1Z5   A0A310SFD3   A0A1L5YQJ1   K4F2M9   A0A084W480   Q17JB2   Q17JB1   A0A1Q3FQ15   A0A1Q3FPV7   A0A1Q3FPW8   A0A1Q3FPQ4   A0A1Q3FPM4   A0A1B0YZI3   U5EXM2   A0A146LWP6   A0A286Q1C4   A0A2I6BPZ8   A0A146LYC2   T2C8X8   A0A2S0X9U9   U5NDP5   A0A2P6KD60   M4HZ37   A0A2T7PK89  

PDB

4F3L     E-value=1.62029e-105,     Score=980

KEGG

692530    K02296 aryl hydrocarbon receptor nuclear translocator-like protein 1 | (RefSeq) Cycb; Cycle like fac

PATHWAY

04711    Circadian rhythm - fly - Bombyx mori (domestic silkworm)

GO

GO:0003700   GO:0005667   GO:0046983   GO:0005634   GO:0005737   GO:0003677   GO:0016021   GO:0006355   GO:0004505   GO:0006559   GO:0004887  

Subcellular location

Nucleus  

Length:

702

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.17508

Exp number, first 60 AAs:

0.00345

Total prob of N-in:

0.00902

outside

1  -  702

 

 

Pi

20.20687

Theta

16.359408

Tajima's D

-1.3018

CLR

0.19702

CSRT

0.0841957902104895

Interpretation

Uncertain