Gene

KWMTBOMO00602

Annotation

PREDICTED:_RNA-directed_DNA_polymerase_from_mobile_element_jockey-like_[Plutella_xylostella]

Location

Bomo_Chr1(-):18265551-18269409      View in EpiBrowser

Full name

RNA-directed DNA polymerase from mobile element jockey      

Alternative Name

Reverse transcriptase

Location in the cell

Mitochondrial   Reliability : 1.851 Nuclear   Reliability : 1.615

CDS

ATGGTTATCCTCCTGGGCGAGACCAAGCTCAAACCTCGACAAGATTTTAGGATGCCCAACTACTTCGTGTACCGACGGGACGAACTGACCTCCAGCGGGCGCCCGTTCAGGGGCACTGCGGCGCTCGTCAGGAGGGACGTGGTGCACGAGGAGCTTGAGCTACTGACCTTCGCCTCTACCAGAACGGTCGGGGTGAGGGTCCACGTACCGGGGGCCGAATTGCGGATTTATGCCGCGTATCGACCCCCGGGTCCTGATTTTGTCGAGGACGATATTAGACGGGCCTTGAACCATGATCGCCATCCGGCCTTGGTGGTCGGGGACCTCAATGCGAAACATGTCGCTTGGGGCTCCCGAATCATCACGCCGCCCGGAAGGCGATTGTACGAGGATGCCGAAAGGGGGGACTACTGCGTGGTCGGCCCCAACGAACCCACACACGTTCCAACGTTGGCCCGGTACCAACCGGACGTATTGGACGTGTGTGTTCACAAGGGGCTACAGTGCCCTCTAGCGATAGAGGCACTGTACGACCTGAGTACCCCTCACCTACCGATCTTGGTCACGGTGGGTTTGGGGATCACTCGGGTCGCGACATCCCCTCTCAGGCCTAGGGTCGACTGGCAGTCCTTTACGGGACTGCTGGCCGACCAATCCTTGTTTCAAGACCCGTCTACCCCTGATGAGGTCGACACGGCGGCTTCCCGTCTCGTCGACACCATCAGGGGAGCACTTGACCAAGTGACGACTCTGGTACCCAGCGGGGGGCCCAGAGCGGAACTCCCGGTGCACCTCAAGACGTTAATTCGTCGGAAGAGGGCACTGAGGAGGCTCTGGGCGACATCTAGGTGTCCCAGGATTAAGCGCGAGCTCAACCGACTTGAGGGTGAGCTGGCGACTAAGATGCGGACTTACCGGGGTGATTCCTGGGAGGGGGGACTGTTGGACGCGTCCGACGACCGTACGATGGCCCCCCTTCACCGCATCTGTCGCCGGCTCACCAACAAGCCTTCCCCCACTTGCCCCTTGGAGGACGAGGGGGGAAGACGGTGTTTTACACCGTTGGCTCGTGCCGAAGTCCTGGCCAACTCGCTGGAGCGGCAGTTCACTCCGAATGTCTCTGCACCCTCGATGGTTGCATTCCATCGTGAGGTGTCAGAGGGTGTAATCCAATTCCTCAAACCGGAATCGCCGGGAGTCGAGCTGGGAGATGACGACTTAGTCACTCCCAGCGAGGTGCGCCTCCTCATCAAGTTGATGAAGAGGCGCAAAGCCCCCGGTGAGGACGGTATTCCTCCCCTCGCCTTGCAAAACCTCCCTCCCTCAATCGTGTCAGCAATGACACGATTGTTTAATTCCATTCTCCGGGTAGGACACTTCCCTGGAACTTGGAAACTGGGCAAGATCATCGTCCTGCCCAAACCCGGCAAGGACAGGAGAAAGCCCTCCAGTTACCGACCGATTACCTTGCTCTCGCACGTGGGCAAGTTGTTCGAGCGGCTGCTCCTGAGGAGAATATCGCCGTATATTCTCCTCAGGCCGGAGCAATTCGGCTTTAGAAGCGGCCACTCGACGACTCTGCAACTGACCCGTGTCCTGCATCACTTGGCAGACCGGCGAAACTCGGGCCAATACACGGTCGCGGTCCTTCTCGATATCGAGAAGGCCTTCGACCGTGTGTGGCACGAGGGGCTGGTCCACAAGCTGCGGGACGCGGGCCTACCGCACGCTCACGTGCGACTGCTCGGGTCGTATCTGGAGGGCAGAACCTTCTTTGTCGCGGTCGAGGGCGCACGGTCTTCCGTGCGTCCCATTACGGCCGGGGTTCCCCAGGGTAGTGTCCTATCACCTATCCTATACGCCCTCTACACCAACGACATCCCCACCCTGGAGGGTCACCTTCGGGCGTGGGAGGAGGACGTGAAGTTGGCCTTGTTCGCTGACGACTCGGCCTACTTCTCGTCCTCTCCGTTCCCCTCTGCAGCCATTATGAGGATGCAGAGGCTTTTGGATTTACTGCCCCAGTGGCTGGACCGTTGGAGAGTCGCGGTCAATGTGGGAAAGACCGCGGCCTTACTCTACGGTCCGGTCCGTATCAGAGTCGTCCCAAAGAAACTCAGCCTCCGAGGTGTGAATGTCGAGTTCAGGACCACGGTCCGGTATCTCGGATGCGACATCGACCGCTCCTTGAGCATGGTCGCGCACGTCAACCGAGTCATCGGTCAGACTCGCGCGGCCAGGTTCTTGTTGCGGCCGGTGTTTGCGTCCGGGCTTCCGACCAGGACCAAACTCGCCATTTACAAGACATACGTCCGTTCCCGCCTCACATACGCTGCTGCGGCCTGGTATCACCTGTTGTCGCCGTCCCAGCGATCTAGGTTGCAGGCCCAGCAGAGTCTTTCCCTCCGCATTATCGTCGGGGCCGGGCAGTACGTCAGAAATGACGTTATTGCCCGGGACCTAGGTGTGGAGTCGCTCGTGGAGTTTGTGACTAGGCTCGCCCGTAATATGTACGAGCGAGCCGAAAACGGGCCCCATGAGCATCTCCACAGCATAGCCCCGCTGCACGCCAGACCACCGGATGGTACGGCGTTGCCGCGGGAGCTATTGGTACCCCCGACGATCGTTCGGAGATAA

Protein

MVILLGETKLKPRQDFRMPNYFVYRRDELTSSGRPFRGTAALVRRDVVHEELELLTFASTRTVGVRVHVPGAELRIYAAYRPPGPDFVEDDIRRALNHDRHPALVVGDLNAKHVAWGSRIITPPGRRLYEDAERGDYCVVGPNEPTHVPTLARYQPDVLDVCVHKGLQCPLAIEALYDLSTPHLPILVTVGLGITRVATSPLRPRVDWQSFTGLLADQSLFQDPSTPDEVDTAASRLVDTIRGALDQVTTLVPSGGPRAELPVHLKTLIRRKRALRRLWATSRCPRIKRELNRLEGELATKMRTYRGDSWEGGLLDASDDRTMAPLHRICRRLTNKPSPTCPLEDEGGRRCFTPLARAEVLANSLERQFTPNVSAPSMVAFHREVSEGVIQFLKPESPGVELGDDDLVTPSEVRLLIKLMKRRKAPGEDGIPPLALQNLPPSIVSAMTRLFNSILRVGHFPGTWKLGKIIVLPKPGKDRRKPSSYRPITLLSHVGKLFERLLLRRISPYILLRPEQFGFRSGHSTTLQLTRVLHHLADRRNSGQYTVAVLLDIEKAFDRVWHEGLVHKLRDAGLPHAHVRLLGSYLEGRTFFVAVEGARSSVRPITAGVPQGSVLSPILYALYTNDIPTLEGHLRAWEEDVKLALFADDSAYFSSSPFPSAAIMRMQRLLDLLPQWLDRWRVAVNVGKTAALLYGPVRIRVVPKKLSLRGVNVEFRTTVRYLGCDIDRSLSMVAHVNRVIGQTRAARFLLRPVFASGLPTRTKLAIYKTYVRSRLTYAAAAWYHLLSPSQRSRLQAQQSLSLRIIVGAGQYVRNDVIARDLGVESLVEFVTRLARNMYERAENGPHEHLHSIAPLHARPPDGTALPRELLVPPTIVRR

Catalytic Activity

a 2'-deoxyribonucleoside 5'-triphosphate + DNA(n) = diphosphate + DNA(n+1)

Cofactor

Mg(2+)
Mn(2+)

Miscellaneous

Prefers poly(rC) and poly(rA) as template and activated DNA is not effective.

Keywords

Nucleotidyltransferase   RNA-directed DNA polymerase   Transferase   Transposable element  

Feature

chain  RNA-directed DNA polymerase from mobile element jockey

Uniprot

A0A2A4JQF8   X1WNI2   X1WZH0   A0A1Y1NA23   J9LFC9   J9LC21   + More
A0A2J7QR37   A0A2J7QY69   A0A2J7PBY3   J9KPF1   A0A2J7PU96   A0A2J7Q6J2   J9JS95   A0A2J7PP17   A0A224X6Q4   A0A023EYS8   A0A2S2NJB5   J9LF86   A0A069DZL8   V5GNJ2   X1WLB2   A0A2J7RE85   A0A139W8G9   A0A224XB44   A0A2J7R7D0   A0A2M4CV42   A0A2M4CV52   J9KCZ4   V5GNF3   A0A2J7PVX3   J9LF85   K7IN67   A0A087UCW3   A0A2J7PDM0   A0A1Y1KUU7   X1WQR0   A0A2S2PPK8   A0A2S2Q383   X1XGU0   Q9BPQ0   A0A0A9YJ00   Q9XXW0   A0A0A9YU04   A0A2J7R098   A0A2J7R4U3   A0A087U3K8   A0A2J7Q9Z1   A0A2J7PMN4   A0A2J7PSM7   A0A2J7QES2   A0A224XIB0   A0A2J7RQ52   A0A139WA11   A0A2J7QB68   Q93137   A0A2A4K918   A0A2S2NGV8   A0A2H8TF37   X1WN18   A0A1Y1K0C8   A0A0N1PFV1   A0A023F069   A0A1Q3G5F7   A0A2J7PQB5   A0A2J7RD70   A0A1Q3G5J4   A0A087T3W0   A0A1Y1LKN6   A0A224XF24   A0A023EZE6   A0A2S2PHL7   A0A2A4IUM2   A0A2S2PA10   A0A2M4BD66   Q04135   Q6R811   A0A2M4BD62   A0A2M4BDA5   A0A0J7K7J8   A0A1B6EGD8   A0A1Y1KFR3   A0A2S2P6C4   A0A2J7Q0Q6   V9GZF1   V9GZA2   P21328   A0A224X6S1   Q961V7   A0A2S2P698   A0A2J7Q0S7   A0A2J7R2E1   X1WXR6   A0A2J7QFL0   A0A2J7R6U1   A0A2S2N814   A0A2S2NH02   A0A224X6U5   A0A2S2N6Q7   X1WQI9   A0A2J7RKP3  

EC Number

2.7.7.49

Pubmed

28004739    25474469    26334808    18362917    19820115    20075255    + More
25401762    10333566    26354079    1705654    14745026    1327974    8394766    2463954    3040362    1714378   

EMBL

NWSH01000895    PCG73652.1    ABLF02008153    ABLF02008462    ABLF02008464    ABLF02034467    + More
GEZM01008457    JAV94772.1    ABLF02023911    ABLF02036316    ABLF02036319    ABLF02048663    ABLF02066977    NEVH01011985    PNF31054.1    NEVH01009134    PNF33528.1    NEVH01027074    PNF13841.1    ABLF02041767    NEVH01021205    PNF19912.1    NEVH01017470    PNF24199.1    ABLF02028535    ABLF02028545    NEVH01023280    PNF18085.1    GFTR01008279    JAW08147.1    GBBI01004395    JAC14317.1    GGMR01004661    MBY17280.1    ABLF02017815    GBGD01000415    JAC88474.1    GALX01005299    JAB63167.1    ABLF02042518    ABLF02057746    NEVH01005277    PNF39135.1    KQ973342    KXZ75569.1    GFTR01008262    JAW08164.1    NEVH01006736    PNF36716.1    GGFL01005012    MBW69190.1    GGFL01004957    MBW69135.1    ABLF02008463    GALX01005359    JAB63107.1    NEVH01020940    PNF20481.1    ABLF02017813    KK119261    KFM75202.1    NEVH01026386    PNF14434.1    GEZM01074951    JAV64378.1    ABLF02050434    ABLF02064867    GGMR01018716    MBY31335.1    GGMS01002992    MBY72195.1    ABLF02055645    AB055391    BAB21761.1    GBHO01010547    GBHO01010546    JAG33057.1    JAG33058.1    AB018558    BAA76304.1    GBHO01021814    GBHO01010549    JAG21790.1    JAG33055.1    NEVH01008277    PNF34262.1    NEVH01007402    PNF35856.1    KK118005    KFM71947.1    NEVH01016340    PNF25410.1    NEVH01023979    PNF17579.1    NEVH01021925    PNF19341.1    NEVH01015305    PNF27092.1    GFTR01008246    JAW08180.1    NEVH01001347    PNF42959.1    KQ971729    KYB24751.1    NEVH01016302    PNF25823.1    U07847    AAA17752.1    NWSH01000032    PCG80496.1    GGMR01003407    MBY16026.1    GFXV01000908    MBW12713.1    ABLF02021177    ABLF02027367    ABLF02066338    GEZM01099921    GEZM01099920    GEZM01099918    GEZM01099906    JAV53125.1    KQ459265    KPJ02064.1    GBBI01003810    JAC14902.1    GFDL01000004    JAV35041.1    NEVH01022639    PNF18527.1    NEVH01005295    PNF38784.1    GFDL01000006    JAV35039.1    KK113281    KFM59799.1    GEZM01053022    JAV74219.1    GFTR01008038    JAW08388.1    GBBI01004571    JAC14141.1    GGMR01016296    MBY28915.1    NWSH01007753    PCG62823.1    GGMR01013409    MBY26028.1    GGFJ01001844    MBW50985.1    X17551    CAA35587.1    AY508487    AAS13459.1    GGFJ01001843    MBW50984.1    GGFJ01001842    MBW50983.1    LBMM01012041    KMQ86458.1    GEDC01000337    JAS36961.1    GEZM01084969    JAV60363.1    GGMR01012283    MBY24902.1    NEVH01019964    PNF22161.1    M95171    AAA29354.1    M91082    AAA28291.1    M22874    M38643    GFTR01008271    JAW08155.1    AY047531    AAK77263.1    GGMR01012305    MBY24924.1    NEVH01019963    PNF22185.1    NEVH01007838    PNF34986.1    ABLF02008605    ABLF02008608    ABLF02008609    ABLF02008610    ABLF02017023    NEVH01014858    PNF27387.1    NEVH01006754    PNF36554.1    GGMR01000676    MBY13295.1    GGMR01003864    MBY16483.1    GFTR01008251    JAW08175.1    GGMR01000226    MBY12845.1    ABLF02022418    NEVH01002716    PNF41415.1   

Proteomes

UP000218220    UP000007819    UP000235965    UP000007266    UP000002358    UP000054359    + More
UP000053268    UP000036403   

PRIDE

Q9BPQ0    Q9XXW0    Q93137    Q04135    P21328    Q961V7    + More

Pfam

PF14529   Exo_endo_phos_2        + More
PF00078   RVT_1
PF07530   PRE_C2HC
PF03372   Exo_endo_phos
PF07727   RVT_2
PF03184   DDE_1

Interpro

IPR000477   RT_dom        + More
IPR036691   Endo/exonu/phosph_ase_sf       
IPR005135   Endo/exonuclease/phosphatase       
IPR006579   Pre_C2HC_dom       
IPR013103   RVT_2       
IPR004875   DDE_SF_endonuclease_dom       

SUPFAM

SSF56219   SSF56219       

Gene 3D

3.60.10.10    

ProteinModelPortal

A0A2A4JQF8   X1WNI2   X1WZH0   A0A1Y1NA23   J9LFC9   J9LC21   + More
A0A2J7QR37   A0A2J7QY69   A0A2J7PBY3   J9KPF1   A0A2J7PU96   A0A2J7Q6J2   J9JS95   A0A2J7PP17   A0A224X6Q4   A0A023EYS8   A0A2S2NJB5   J9LF86   A0A069DZL8   V5GNJ2   X1WLB2   A0A2J7RE85   A0A139W8G9   A0A224XB44   A0A2J7R7D0   A0A2M4CV42   A0A2M4CV52   J9KCZ4   V5GNF3   A0A2J7PVX3   J9LF85   K7IN67   A0A087UCW3   A0A2J7PDM0   A0A1Y1KUU7   X1WQR0   A0A2S2PPK8   A0A2S2Q383   X1XGU0   Q9BPQ0   A0A0A9YJ00   Q9XXW0   A0A0A9YU04   A0A2J7R098   A0A2J7R4U3   A0A087U3K8   A0A2J7Q9Z1   A0A2J7PMN4   A0A2J7PSM7   A0A2J7QES2   A0A224XIB0   A0A2J7RQ52   A0A139WA11   A0A2J7QB68   Q93137   A0A2A4K918   A0A2S2NGV8   A0A2H8TF37   X1WN18   A0A1Y1K0C8   A0A0N1PFV1   A0A023F069   A0A1Q3G5F7   A0A2J7PQB5   A0A2J7RD70   A0A1Q3G5J4   A0A087T3W0   A0A1Y1LKN6   A0A224XF24   A0A023EZE6   A0A2S2PHL7   A0A2A4IUM2   A0A2S2PA10   A0A2M4BD66   Q04135   Q6R811   A0A2M4BD62   A0A2M4BDA5   A0A0J7K7J8   A0A1B6EGD8   A0A1Y1KFR3   A0A2S2P6C4   A0A2J7Q0Q6   V9GZF1   V9GZA2   P21328   A0A224X6S1   Q961V7   A0A2S2P698   A0A2J7Q0S7   A0A2J7R2E1   X1WXR6   A0A2J7QFL0   A0A2J7R6U1   A0A2S2N814   A0A2S2NH02   A0A224X6U5   A0A2S2N6Q7   X1WQI9   A0A2J7RKP3  

PDB

6AR3     E-value=8.3687e-06,     Score=121

KEGG

101739096    K08220 MFS transporter, FLVCR family, feline leukemia virus subgroup C receptor-related protein | (R

GO

GO:0003964   GO:0004519   GO:0003676   GO:0016021  

Length:

878

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.01598

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00006

outside

1  -  878

 

 

Pi

19.99182

Theta

28.54675

Tajima's D

-1.073406

CLR

0

CSRT

0.123793810309485

Interpretation

Uncertain