Gene

KWMTBOMO00560

Annotation

PREDICTED:_RNA-directed_DNA_polymerase_from_mobile_element_jockey-like_[Plutella_xylostella]

Location

Bomo_Chr1(-):16578760-16584998      View in EpiBrowser

Full name

RNA-directed DNA polymerase from mobile element jockey      

Alternative Name

Reverse transcriptase

Location in the cell

Mitochondrial   Reliability : 2.02

CDS

ATGGCTAGCCAGGAACTGCGCATCATTTATTGGAACCCCGGCGGGGTAAAACCCCGCAAGAACGAGCTCTTGGTTCTCGCCCGGGAGTACAACCCTGAGGTTGTGCTCCTGGGCGAGACCAAGCTACGTCCTCGGGATGTGTTCAGGATTCCAAACTACTTCATGTACCGACGTGACGAGGTGAGTCCTGCCGGGACGCCGTTCAGGGGCACTGCGGCGCTCGTCAGGCGAGACGTGGTGCATGATCAGTTGGATTTGCTGGCCTTCACATCGACAAGGTCGATCGGTGTGAGGATCCACACCTCGGGGGGAGATATGCGGGTTTATGCCGCGTATAGACCCCCGGGGCCTGATTTCCACCCCGGGGACATAAGACGGGTCCTGAATTGCGACAGCCGCCCAGCTCTGCTGGTCGGGGACCTCAACGCGAAGCACGTCGCGTGGGGCTCCCGACTGAACTCAGCAGTGGGCAGGCGGCTGTTAGAAGATGCCGATAGGGGCGACTACTCTGTGGTCGGCCCCGACGAACCCACGCACATTCCGACCGCCGCGCAACTCCAGCCCGACGTGTTGGATGTGTGCGTTCATAAAGGGCTACGGTGCCCCTTAACTATTGAGGCACTGTACGACCTGGGTACCCCCCATCTCCCTATCCTGGTCACACTGGGAATGGGGCTTACCCGGGTTGCGACCTCGCCCCTACGACCGAAGGTCGACTGGGAGCTCTTTAAGAGACTCCTAGTCGACCTTCCCGTAATTCAGGACCCCAACACCCCTGAGGGGGTCGACGACGCGGCAGTCCGCCTTGTCGACTCCATCAGGGGAGCGATCGACCAGGCGACGACTCTTGTGCCCAGCGGCGGGCCCAGAGGTATACTCCCGGCCCATCTGAAAGCGATTATTCGCCGGAAGAGGGGCCTGAGGAGGCTCTGGGCGACAACTCGTTGTCCCAGGATCAAGCGCGAGCTTAATGAGCTGGAAGCGGAGTTGGCGGCGAAGATTAGCTCCTATCGGGGCTATGCGTGGGAGGAACGGATCGAGGAGGCCCGTGAGGACCCCTCGTCCGTGTCCCTCCACCGACTTTGCCGCCAGCTCTCAAATCGGCCTGCCCCGACTTGTCCACTCGTGGACGAGAGGGGCAACCGATGCTTCTCGGCTCAGGCCCGCGCCGATGTCCTGGCCGTAATGCTGGAGCGGCAGTTCGCTCCAAATAACTCTGCACCCTCAGAGGCCGCATTCCACCAATCGGTGGAAGAGAGCGTAGCAAGCCTACTCTCCTCCCCGGTGCCACCGTTGGGAGATGGTGATTTCATCACTCCCAGTGAATTGCGCCTCTCCATCAAGCGGATGAAGAGGCGCAAGGCGCCGGGCGAGGACGGTATTCCCTCCCTCGCATTTTTCCACTTCCCCGAAACGGTGGTGTCATTCACGACACGACTGTTCAATTCCATTCTGTCCACAGGACACTTCCCGGGAACTTGGAAATTGGGCAAGGTTATTGCCCTGCCCAAACCCGGCAAGGATAGGAGAAATCCCTCCAGTTATCGTCCGATCACTCTGCTGTCGCATATGGGCAAGTTGTTCGAGCGGCTGCTGCTGAGAAGGGTGTCGCCGCACATCCTTCTCAGACCCGAGCAATTCGGGTTTCGCAGCGGTCACTCGACAACGCTGCAATTGGTCCGCGTTATGCACCACTTGGCGGATCGGTCCAACGCGCGCCAGTACACGGCCGCAGTCTTTCTCGATATCGAGAAGGCCTTCGACCGTGTCTGGCATGCGGGACTGATCTACAAGCTGTTGCAGAACACGGACCTCCAGCACGCCTATGTGCGACTGCTGGGGTCGTACCTGGAGGGAAGATCCTTCCTTGTCGCGGTCGAGGGCGCAAAGTCGTCGGTGCGCCCAGTCACGGCCGGAGTTCCCCAGGGAAGCGTCCTGGCACCAGTCCTCTACGCTCTCTACACCAACGACATTCCCACGCTTGAGGGCAACCTCCAAGCGTGGGAAGCCGACGTAAAGTTGGCGCTGTTTGCCGACGACAGCGCCTACTTCTCGTCCTCTAATTTCCCCTCTGCGGCCATTTCGAGGATGCAGAGGCTGTTGGACCTACTGCCCCAGTGGCTGGACCGATGGAGGGTCGCGGTCAATGTGGGGAAGACCGCGGCTATCCTCTTCGGTCCGGTCCGCACAAGAGCCGTCCCAGGACAGCTCAGTCTCCGTGGAGTCAATGTCGAGTTTAGGCCCAGTGTCCGATACCTGGGAGTCAGTATCGACCGGAGTTTGAGGATGACCGCCCACGCCAAGTCGGCGTTGGCGGCCGCCCGCTATGCGAGGTTTCTCCTCCGGCCGGTGTTGGCCTCCAGGTTGCCGACCAGGACTAGACTCGGCATTTACAAGACGTATGTCCGTTCCCGTATCACGTACGCAGCTGCGGCCTGGTATCACCTCATCCCGCAGATCATGCGGGTGAAGTTACAGGCCCAGCAGAATCTGGCTCTTCGCACGATAGTCGGAGCAGGGCGTTACGTCAGAAATGACGTAATCGCCCGGGATCTAGATGTGGAGTCGCTCGAGGAGTTCATTCGGAGGCTAGCTCGTAATATGTACGAGCGGGCTGACGGTGGACCCCACGAGCATCTCCACAATATAGCTCCCTTGCACGCCAGACCACCTGATGGTCAGGCGCTACCAAGGGAGCTACTGGAACCCCCGGCTATGGTCAACTACTGA

Protein

MASQELRIIYWNPGGVKPRKNELLVLAREYNPEVVLLGETKLRPRDVFRIPNYFMYRRDEVSPAGTPFRGTAALVRRDVVHDQLDLLAFTSTRSIGVRIHTSGGDMRVYAAYRPPGPDFHPGDIRRVLNCDSRPALLVGDLNAKHVAWGSRLNSAVGRRLLEDADRGDYSVVGPDEPTHIPTAAQLQPDVLDVCVHKGLRCPLTIEALYDLGTPHLPILVTLGMGLTRVATSPLRPKVDWELFKRLLVDLPVIQDPNTPEGVDDAAVRLVDSIRGAIDQATTLVPSGGPRGILPAHLKAIIRRKRGLRRLWATTRCPRIKRELNELEAELAAKISSYRGYAWEERIEEAREDPSSVSLHRLCRQLSNRPAPTCPLVDERGNRCFSAQARADVLAVMLERQFAPNNSAPSEAAFHQSVEESVASLLSSPVPPLGDGDFITPSELRLSIKRMKRRKAPGEDGIPSLAFFHFPETVVSFTTRLFNSILSTGHFPGTWKLGKVIALPKPGKDRRNPSSYRPITLLSHMGKLFERLLLRRVSPHILLRPEQFGFRSGHSTTLQLVRVMHHLADRSNARQYTAAVFLDIEKAFDRVWHAGLIYKLLQNTDLQHAYVRLLGSYLEGRSFLVAVEGAKSSVRPVTAGVPQGSVLAPVLYALYTNDIPTLEGNLQAWEADVKLALFADDSAYFSSSNFPSAAISRMQRLLDLLPQWLDRWRVAVNVGKTAAILFGPVRTRAVPGQLSLRGVNVEFRPSVRYLGVSIDRSLRMTAHAKSALAAARYARFLLRPVLASRLPTRTRLGIYKTYVRSRITYAAAAWYHLIPQIMRVKLQAQQNLALRTIVGAGRYVRNDVIARDLDVESLEEFIRRLARNMYERADGGPHEHLHNIAPLHARPPDGQALPRELLEPPAMVNY

Catalytic Activity

a 2'-deoxyribonucleoside 5'-triphosphate + DNA(n) = diphosphate + DNA(n+1)

Cofactor

Mg(2+)
Mn(2+)

Miscellaneous

Prefers poly(rC) and poly(rA) as template and activated DNA is not effective.

Keywords

Nucleotidyltransferase   RNA-directed DNA polymerase   Transferase   Transposable element  

Feature

chain  RNA-directed DNA polymerase from mobile element jockey

Uniprot

A0A2A4JQF8   X1WNI2   J9LFC9   X1WZH0   A0A1Y1NA23   A0A2J7Q6J2   + More
A0A2J7QY69   A0A2J7PBY3   A0A2J7QR37   A0A2J7PU96   X1WLB2   J9LC21   V5GNJ2   A0A224X6Q4   A0A2S2NJB5   J9KPF1   A0A023EYS8   A0A224XB44   J9JS95   A0A2J7R4U3   V5GNF3   A0A2J7R7D0   A0A2J7RE85   A0A0A9YJ00   A0A2J7PDM0   A0A0A9YU04   A0A2J7R098   A0A2J7Q9Z1   A0A2J7QES2   A0A2S2NGV8   A0A2J7PSM7   A0A2J7PMN4   A0A2J7QB68   A0A2J7RQ52   J9LF86   A0A2M4CV52   A0A069DZL8   A0A2S2Q383   A0A2H8TF37   A0A023EZE6   A0A2J7PVX3   A0A139W8G9   A0A224XIB0   A0A087UCW3   A0A2S2R9D4   Q9BPQ0   A0A023F0I3   A0A069DX78   Q9XXW0   J9LR29   A0A1Y1K0C8   A0A224XHW8   A0A2A4K918   J9KCZ4   A0A2A4IUM2   X1XGU0   P21328   A0A1Y1KFR3   A0A142LX53   A0A023F069   A0A1Y1KUU7   X1WN18   A0A224X6R6   K7IN67   A0A2S2PHL7   A0A224XF24   A0A1Y1LKN6   A0A139WA11   O96546   A0A2S2P6C4   A0A2S2N814   A0A0N1PFV1   A0A0J7MTN6   A0A2S2NH02   A0A2S2QEE0   Q93137   A0A224X6W2   A0A2S2P6S3   A0A2M4BD83   A0A2J7QFL0   J9LF85   A0A1Q3G5J4   A0A2J7Q0Q6   A0A2J7R2E1   A0A2S2N6Q7   A0A224X6S1   A0A2J7RKP3   A0A2J7R6U1   A0A087UGF5   A0A2J7RMG0   Q24335   J9LYS0   A0A2S2P7B2   A0A2H8TKI9   A0A2J7RD70   A0A2S2PUS3   A0A2J7PQB5   A0A2M4BD66  

EC Number

2.7.7.49

Pubmed

28004739    25474469    25401762    26334808    18362917    19820115    + More
10333566    2463954    3040362    1714378    25527032    20075255    10380107    26354079    2441397   

EMBL

NWSH01000895    PCG73652.1    ABLF02008153    ABLF02008462    ABLF02008464    ABLF02023911    + More
ABLF02034467    GEZM01008457    JAV94772.1    NEVH01017470    PNF24199.1    NEVH01009134    PNF33528.1    NEVH01027074    PNF13841.1    NEVH01011985    PNF31054.1    NEVH01021205    PNF19912.1    ABLF02042518    ABLF02057746    ABLF02036316    ABLF02036319    ABLF02048663    ABLF02066977    GALX01005299    JAB63167.1    GFTR01008279    JAW08147.1    GGMR01004661    MBY17280.1    ABLF02041767    GBBI01004395    JAC14317.1    GFTR01008262    JAW08164.1    ABLF02028535    ABLF02028545    NEVH01007402    PNF35856.1    GALX01005359    JAB63107.1    NEVH01006736    PNF36716.1    NEVH01005277    PNF39135.1    GBHO01010547    GBHO01010546    JAG33057.1    JAG33058.1    NEVH01026386    PNF14434.1    GBHO01021814    GBHO01010549    JAG21790.1    JAG33055.1    NEVH01008277    PNF34262.1    NEVH01016340    PNF25410.1    NEVH01015305    PNF27092.1    GGMR01003407    MBY16026.1    NEVH01021925    PNF19341.1    NEVH01023979    PNF17579.1    NEVH01016302    PNF25823.1    NEVH01001347    PNF42959.1    ABLF02017815    GGFL01004957    MBW69135.1    GBGD01000415    JAC88474.1    GGMS01002992    MBY72195.1    GFXV01000908    MBW12713.1    GBBI01004571    JAC14141.1    NEVH01020940    PNF20481.1    KQ973342    KXZ75569.1    GFTR01008246    JAW08180.1    KK119261    KFM75202.1    GGMS01017365    MBY86568.1    AB055391    BAB21761.1    GBBI01003747    JAC14965.1    GBGD01000389    JAC88500.1    AB018558    BAA76304.1    ABLF02025082    ABLF02039175    ABLF02041809    GEZM01099921    GEZM01099920    GEZM01099918    GEZM01099906    JAV53125.1    GFTR01008254    JAW08172.1    NWSH01000032    PCG80496.1    ABLF02008463    NWSH01007753    PCG62823.1    ABLF02055645    M22874    M38643    GEZM01084969    JAV60363.1    KU543687    AMS38379.1    GBBI01003810    JAC14902.1    GEZM01074951    JAV64378.1    ABLF02021177    ABLF02027367    ABLF02066338    GFTR01008269    JAW08157.1    GGMR01016296    MBY28915.1    GFTR01008038    JAW08388.1    GEZM01053022    JAV74219.1    KQ971729    KYB24751.1    AF081103    AAC72921.1    GGMR01012283    MBY24902.1    GGMR01000676    MBY13295.1    KQ459265    KPJ02064.1    LBMM01018163    KMQ83860.1    GGMR01003864    MBY16483.1    GGMS01006359    MBY75562.1    U07847    AAA17752.1    GFTR01008260    JAW08166.1    GGMR01012443    MBY25062.1    GGFJ01001822    MBW50963.1    NEVH01014858    PNF27387.1    ABLF02017813    GFDL01000006    JAV35039.1    NEVH01019964    PNF22161.1    NEVH01007838    PNF34986.1    GGMR01000226    MBY12845.1    GFTR01008271    JAW08155.1    NEVH01002716    PNF41415.1    NEVH01006754    PNF36554.1    KK119692    KFM76444.1    NEVH01002556    PNF42024.1    M17214    AAA28508.1    ABLF02041861    GGMR01012676    MBY25295.1    GFXV01002840    MBW14645.1    NEVH01005295    PNF38784.1    GGMR01020516    MBY33135.1    NEVH01022639    PNF18527.1    GGFJ01001844    MBW50985.1   

Proteomes

UP000218220    UP000007819    UP000235965    UP000007266    UP000054359    UP000002358    + More
UP000053268    UP000036403   

PRIDE

Q9BPQ0    Q9XXW0    P21328    Q93137    Q24335   

Pfam

PF14529   Exo_endo_phos_2        + More
PF00078   RVT_1
PF07530   PRE_C2HC
PF03372   Exo_endo_phos
PF07727   RVT_2

Interpro

IPR000477   RT_dom        + More
IPR036691   Endo/exonu/phosph_ase_sf       
IPR005135   Endo/exonuclease/phosphatase       
IPR006579   Pre_C2HC_dom       
IPR013103   RVT_2       

SUPFAM

SSF56219   SSF56219       

Gene 3D

3.60.10.10    

ProteinModelPortal

A0A2A4JQF8   X1WNI2   J9LFC9   X1WZH0   A0A1Y1NA23   A0A2J7Q6J2   + More
A0A2J7QY69   A0A2J7PBY3   A0A2J7QR37   A0A2J7PU96   X1WLB2   J9LC21   V5GNJ2   A0A224X6Q4   A0A2S2NJB5   J9KPF1   A0A023EYS8   A0A224XB44   J9JS95   A0A2J7R4U3   V5GNF3   A0A2J7R7D0   A0A2J7RE85   A0A0A9YJ00   A0A2J7PDM0   A0A0A9YU04   A0A2J7R098   A0A2J7Q9Z1   A0A2J7QES2   A0A2S2NGV8   A0A2J7PSM7   A0A2J7PMN4   A0A2J7QB68   A0A2J7RQ52   J9LF86   A0A2M4CV52   A0A069DZL8   A0A2S2Q383   A0A2H8TF37   A0A023EZE6   A0A2J7PVX3   A0A139W8G9   A0A224XIB0   A0A087UCW3   A0A2S2R9D4   Q9BPQ0   A0A023F0I3   A0A069DX78   Q9XXW0   J9LR29   A0A1Y1K0C8   A0A224XHW8   A0A2A4K918   J9KCZ4   A0A2A4IUM2   X1XGU0   P21328   A0A1Y1KFR3   A0A142LX53   A0A023F069   A0A1Y1KUU7   X1WN18   A0A224X6R6   K7IN67   A0A2S2PHL7   A0A224XF24   A0A1Y1LKN6   A0A139WA11   O96546   A0A2S2P6C4   A0A2S2N814   A0A0N1PFV1   A0A0J7MTN6   A0A2S2NH02   A0A2S2QEE0   Q93137   A0A224X6W2   A0A2S2P6S3   A0A2M4BD83   A0A2J7QFL0   J9LF85   A0A1Q3G5J4   A0A2J7Q0Q6   A0A2J7R2E1   A0A2S2N6Q7   A0A224X6S1   A0A2J7RKP3   A0A2J7R6U1   A0A087UGF5   A0A2J7RMG0   Q24335   J9LYS0   A0A2S2P7B2   A0A2H8TKI9   A0A2J7RD70   A0A2S2PUS3   A0A2J7PQB5   A0A2M4BD66  

PDB

6AR3     E-value=0.000178549,     Score=110

KEGG

105842439    no KO assigned | (RefSeq) uncharacterized LOC105842439

GO

GO:0003964   GO:0004519  

Length:

909

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.03407

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00039

outside

1  -  909

 

 

Pi

26.46009

Theta

26.693817

Tajima's D

-0.379499

CLR

0

CSRT

0.275136243187841

Interpretation

Uncertain