Silkworm Genome Informatics Database

Gene

KWMTBOMO00519

Pre Gene Modal

BGIBMGA012275

Annotation

Uncharacterized_protein_OBRU01_24930?_partial_[Operophtera_brumata]

Location

Bomo_Chr1(-):15194590-15195889 View in EpiBrowser

Transcription factor

zf-C2H2

Location in the cell

Nuclear Reliability : 3.136

CDS

ATGAAAGGTAGCACTGAAGGCGACACAGTGAACGATAGTGTAACGACGAGAACATTTTCTGAGGACACCACTTATTTTATAATTAAAGTTCAAGGCGAGGGTATTGATGGAGGTGCTTTAAAAACTACGAGTCTCGGTGGTATTATCAATAGTACACAGATGAAAGTCAAACCTGCTGTAAACTTAAGGGGCCCTTTTACTTGCACATTTCCATCGATGTTACGTCCGGACGTGCTGTGCCGTCAAATATTCTTCGACTGTTGTGATTATTCACGTCACTACCGAGAAGAGCACACTAAAAGACGCAAAGCCGCACTTCGTTGTCAAGTGTGCGAAAAGCCTCTAGACAAGGAATTTAACCAAAACAACCCGGTACAACGTCCGAGTGTGACGACACTTTGTAGAATTTGCGGCGAGACCTTTTCCGACAACGCGTCTTACGTCGAGCACAATCGTTTCGTTCACGCAAAAATGAAGCCCTACCAGTGTCCGATTTGTGCGAAGCGTTTTACTCAGCAAGGAGGCTTGCAGCAACACATGAGGATGCATTCCGGTATAAGACCTTTCGCTTGCACGTATTGCCCTAAAGCGTTCACTCAGAAAGCCGGTCTCGACCAGCATCTACGTACTCACACCAAAATTAAGCCGTTCCGATGCGTCATATGCGGCAAGTGTTTTTCCCAATCGGTGCACTTGAGGCAGCACATGAGAACTCACACGAATATACAACCGTTCGAATGTGTATACTGCGGAAAAAGATTTAAACAGACGAGTCATTTAAATTTTCATTTGCGTTCGCATGTCGGCGAAGGCGTGATTACAATGGAGAAATATGCTCAGGCGATACAGCCAGAGAATCAGTTGGATTTTTTGAACTTTGCAAGCTTACAGCCGGTGCAGGATGGTGACACCCTTTACTATGCAGCAGAACTAGCACCGCCGAATTCCATGGTCGTTCAAAGAAACTTTCCTTATCAAGTGCAAAGCTCTGATGGTATGTTACCGATTTAA

Protein

MKGSTEGDTVNDSVTTRTFSEDTTYFIIKVQGEGIDGGALKTTSLGGIINSTQMKVKPAVNLRGPFTCTFPSMLRPDVLCRQIFFDCCDYSRHYREEHTKRRKAALRCQVCEKPLDKEFNQNNPVQRPSVTTLCRICGETFSDNASYVEHNRFVHAKMKPYQCPICAKRFTQQGGLQQHMRMHSGIRPFACTYCPKAFTQKAGLDQHLRTHTKIKPFRCVICGKCFSQSVHLRQHMRTHTNIQPFECVYCGKRFKQTSHLNFHLRSHVGEGVITMEKYAQAIQPENQLDFLNFASLQPVQDGDTLYYAAELAPPNSMVVQRNFPYQVQSSDGMLPI

Uniprot

H9JRW5 A0A2H1W1G9 A0A2A4JZ80 A0A0L7KJF3 A0A194PEX2 A0A194QZK9 + More
A0A212EP26 A0A2A4IUN0 A0A2A4ITU3 A0A2H1V0R4 H9IWV5 A0A0N1PF71 A0A0N0PG61 A0A212F818 A0A0G2L2K0 A0A2I4DCY7 A0A2I4DCY8 A0A2I4DD01 A0A2R8Q627

Pubmed

19121390 26227816 26354079 22118469 23594743

EMBL

BABH01017026 ODYU01005688 SOQ46796.1 NWSH01000394 PCG76720.1 JTDY01009641 + More
KOB63176.1 KQ459605 KPI91827.1 KQ461108 KPJ09031.1 AGBW02013565 OWR43211.1 NWSH01007082 PCG63098.1 PCG63099.1 ODYU01000153 SOQ34440.1 BABH01020996 BABH01020997 KQ458725 KPJ05373.1 LADJ01064520 KPJ21652.1 AGBW02009805 OWR49887.1 CR388390 BX572103

Proteomes

UP000005204 UP000218220 UP000037510 UP000053268 UP000053240 UP000007151 + More
UP000000437 UP000192220

PRIDE

H9JRW5 H9IWV5

Pfam

PF00096 zf-C2H2

Interpro

IPR013087   Znf_C2H2_type        + More
IPR036236   Znf_C2H2_sf
IPR017114   YY-1-like

SUPFAM

SSF57667 SSF57667

ProteinModelPortal

H9JRW5 A0A2H1W1G9 A0A2A4JZ80 A0A0L7KJF3 A0A194PEX2 A0A194QZK9 + More
A0A212EP26 A0A2A4IUN0 A0A2A4ITU3 A0A2H1V0R4 H9IWV5 A0A0N1PF71 A0A0N0PG61 A0A212F818 A0A0G2L2K0 A0A2I4DCY7 A0A2I4DCY8 A0A2I4DD01 A0A2R8Q627

PDB

2I13 E-value=1.30366e-29, Score=322

KEGG

101745203 no KO assigned | (RefSeq) zinc finger protein 266-like

GO

GO:0003676 GO:0046872 GO:0043565 GO:0008270 GO:0005524 GO:0005488 GO:0003677 GO:0003707 GO:0007169 GO:0016021

Length:

336

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00318

Exp number, first 60 AAs:

0.00123

Total prob of N-in:

0.02242

outside

1 - 336

Pi

23.588395

Theta

17.509034

Tajima's D

1.35048

CLR

0.70728

CSRT

0.76141192940353

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics