Silkworm Genome Informatics Database

Gene

KWMTBOMO00379

Pre Gene Modal

BGIBMGA000716

Annotation

nuclear_hormone_receptor_[Bombyx_mori]

Location

Bomo_Chr1(+):11253049-11269571 View in EpiBrowser

Full name

Nuclear hormone receptor FTZ-F1

Alternative Name

BmFTZ-F1
Nuclear receptor subfamily 5 group A member 3

Transcription factor

SF-like

Location in the cell

Nuclear Reliability : 3.363

CDS

ATGTCCCCATTTGATTTAAGTCCTGGTCCAGAAGGATCGGCTTCGGGTGGTGGACCTTCCAGTGCTTCCCAACAATATGTGCCTCAAGGCGCAGCATACCAATGCCCCCCTGAACAACAATCATTTGGATATGCCAATCTGGATGCTTCATATCTATTTCCGACAGGCACTGGAGGTGAACCAGGAGCGTATCTGCCGACAGCAGGAACAGTTTGCGACCAAACTGATACCAAGGATGTAATAGAAGAATTGTGTCCCGTCTGTGGAGACAAAGTCAGCGGCTACCACTATGGATTGCTGACGTGCGAATCCTGCAAAGGTTTCTTCAAAAGAACCGTTCAGAACAAGAAGGTTTATACATGCGTCGCCGAAAGAGCCTGCCACATAGACAAAACTCAACGGAAACGCTGTCCCTTTTGCCGTTTCCAGAAATGTCTTGATGTGGGCATGAAACTTGAAGCGGTTCGAGCAGATCGTATGCGCGGTGGTCGCAATAAATTTGGCCCTATGTACAAACGAGACCGTGCCCGTAAACTACAAATGATGCGTCAGCGACAAATCGCCGTTCAGACTCTGCGCGGTTCTCTAGGGGATGGTGGATTAGTCCTTGGTTTTGGTTCTCCGTACACAGCTGTATCCGTTAAACAAGAGATACAGATTCCGCAAGTATCATCATTGACGTCCTCGCCTGAGTCGTCGCCGGGACCAGCGCTCCTTGGGGCTCAGCCACAGCCGCCGCAGCCACCTCCACCACCAACTCACGACAAGTGGGAAGCCCACTCACCACACTCGGCGTCGCCGGATGCTTTCACGTTCGATACACAATCGAACACCGCCGCTACACCATCCAGCACAGCCGAAGCTACTAGCACTGAAACTTTACGAGTTTCTCCAATGATCAGAGAATTCGTACAAACCGTCGATGACCGCGAGTGGCAGAATGCACTGTTCGGACTCTTACAAAGCCAAACATATAACCAGTGCGAAGTAGATCTCTTCGAGTTAATGTGCAAAGTGCTGGACCAAAATTTATTCTCTCAAGTGGATTGGGCAAGAAACACAGTGTTCTTTAAGTATTTAAAGGTTGATGACCAAATGAAACTTCTACAGGACTCATGGTCTGTTATGCTGGTTTTGGATCATTTACACCAGAGAATGCACAATGGTCTGCCAGACGAGACCACACTCCACAACGGGCAGAAGTTTGACCTGCTGTGTTTGGGGCTACTTGGAGTTCCTTCATTAGCCGACCACTTCAATGAATTACAGAATAAACTAGCAGAATTGAAATTCGACGTTCCAGATTACATATGCGTTAAATTCATGCTTCTTCTCAATCCCGAGGTTAGGGGTATCGTAAACGTGAAGTGCGTTCGTGAAGGTTACCAAACAGTACAAGCCGCCCTTCTTGACTACACTCTTACCTGCTATCCAACGATACAGGATAAGTTTGGAAAACTTGTAATGGTAGTGCCAGAGATACACGCTTTAGCGGCTCGGGGAGAAGAGCACCTGTACCAGCGGCATTGTGCAGGCCAGGCACCTACCCAGACTCTTCTCATGGAAATGCTGCACGCAAAACGCAAGCCGAACGGAGGCGAAATGGTAAACCGGAGTGCAGAGCACACACCAACTCTAGACAGATTATCTTGA

Protein

MSPFDLSPGPEGSASGGGPSSASQQYVPQGAAYQCPPEQQSFGYANLDASYLFPTGTGGEPGAYLPTAGTVCDQTDTKDVIEELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNKKVYTCVAERACHIDKTQRKRCPFCRFQKCLDVGMKLEAVRADRMRGGRNKFGPMYKRDRARKLQMMRQRQIAVQTLRGSLGDGGLVLGFGSPYTAVSVKQEIQIPQVSSLTSSPESSPGPALLGAQPQPPQPPPPPTHDKWEAHSPHSASPDAFTFDTQSNTAATPSSTAEATSTETLRVSPMIREFVQTVDDREWQNALFGLLQSQTYNQCEVDLFELMCKVLDQNLFSQVDWARNTVFFKYLKVDDQMKLLQDSWSVMLVLDHLHQRMHNGLPDETTLHNGQKFDLLCLGLLGVPSLADHFNELQNKLAELKFDVPDYICVKFMLLLNPEVRGIVNVKCVREGYQTVQAALLDYTLTCYPTIQDKFGKLVMVVPEIHALAARGEEHLYQRHCAGQAPTQTLLMEMLHAKRKPNGGEMVNRSAEHTPTLDRLS

Similarity

Belongs to the nuclear hormone receptor family.
Belongs to the nuclear hormone receptor family. NR5 subfamily.

Keywords

Activator Complete proteome Direct protein sequencing DNA-binding Metal-binding Nucleus Receptor Reference proteome Transcription Transcription regulation Zinc Zinc-finger

Feature

chain Nuclear hormone receptor FTZ-F1

Uniprot

F8WSN3 H9ITY6 Q8WSJ3 A0A1U8YID6 A0A0N9K0H2 A0A1U8YID5 + More
A0A2H1WHH2 A0A1U8YIC2 A0A0L7LBW8 P49867 G8CT15 A0A2A3E5G8 A0A154PAI9 A0A194QS18 A0A151WLR9 E9GRY3 A0A067QT18 E0VW85

Pubmed

22460818 19121390 11378418 26325588 26227816 8150206 + More
26354079 21292972 24845553 20566863

EMBL

AB649122 BAK53999.1 BABH01007178 AF288089 AAL50351.1 KR058775 + More
AMP42756.1 KT363836 ALG36655.1 KR058774 AMP42755.1 ODYU01008376 SOQ51914.1 KR058773 AMP42754.1 JTDY01001750 KOB72997.1 D10953 AF426830 HQ260326 ADT91626.1 KZ288380 PBC26532.1 KQ434846 KZC08384.1 KQ461196 KPJ06336.1 KQ982959 KYQ48783.1 GL732561 EFX77612.1 KK853574 KDR06609.1 DS235817 EEB17641.1

Proteomes

UP000005204 UP000037510 UP000242457 UP000076502 UP000053240 UP000075809 + More
UP000000305 UP000027135 UP000009046

PRIDE

F8WSN3 H9ITY6 P49867

Pfam

PF00104 Hormone_recep + More
PF00105 zf-C4

Interpro

IPR013088   Znf_NHR/GATA        + More
IPR000536   Nucl_hrmn_rcpt_lig-bd
IPR001628   Znf_hrmn_rcpt
IPR035500   NHR-like_dom_sf
IPR001723   Nuclear_hrmn_rcpt
IPR016355   NR5_fam

SUPFAM

SSF48508 SSF48508

Gene 3D

1.10.565.10 3.30.50.10

ProteinModelPortal

F8WSN3 H9ITY6 Q8WSJ3 A0A1U8YID6 A0A0N9K0H2 A0A1U8YID5 + More
A0A2H1WHH2 A0A1U8YIC2 A0A0L7LBW8 P49867 G8CT15 A0A2A3E5G8 A0A154PAI9 A0A194QS18 A0A151WLR9 E9GRY3 A0A067QT18 E0VW85

PDB

2XHS E-value=1.49489e-106, Score=988

KEGG

693070 K08705 nuclear receptor subfamily 5 group A member 3 | (RefSeq) Ftz-f1, BFTZ-F1, BmFTZ-F1, NR5A3; nu

GO

GO:0005634 GO:0003707 GO:0043565 GO:0008270 GO:0003700 GO:0006355 GO:0003677 GO:0000976 GO:0004879 GO:0009755 GO:0045944 GO:0090575 GO:0003682 GO:0009888 GO:0043401 GO:0007169 GO:0016021

PANTHER

PTHR24086

Subcellular location

Nucleus

Length:

550

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00306

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00015

outside

1 - 550

Pi

2.870098

Theta

18.068605

Tajima's D

-1.228485

CLR

0.095977

CSRT

0.0967451627418629

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics