Gene

KWMTBOMO00166

Pre Gene Modal

BGIBMGA000607

Annotation

PREDICTED:_transcriptional_repressor_scratch_2-like?_partial_[Bombyx_mori]

Location

Bomo_Chr1(+):5248667-5250087      View in EpiBrowser

Transcription factor

zf-C2H2

Location in the cell

Nuclear   Reliability : 2.794

CDS

ATGAGATTTGGATTATTAACATATTTTATTGTTACAGGTTACACCGAGGAGAAACCTTCCACGCATTTCACCGCCCAGTTGCCGAATGAGCCCGAGCCTAAGTCGAAGTACACATGCAGCGAGTGCGGGAAGCGATATGCCACGTCATCCAACCTATCACGTCACAAGCAGACGCACCGCAGCTTGGATTCTGTGGCTGCTAAGCGGTGTGGTGAGTGCGGTAAAGCATACGTGTCGATGCCTGCACTAGCAATGCACGTGCTTACACATCAGCTATCGCACGTGTGCGGTGTATGCGGGAAGTTGTTCTCAAGGCCGTGGCTCCTGCAGGGTCATTTACGTTCGCACACTGGAGAAAAACCCTACGGGTGTGCTCATTGCGGTAAAGCGTTTGCGGACCGTTCTAACTTACGAGCCCATATGCAAACACACTCTTCAGATAAAAACTTTGAGTGTTCGCGTTGTCATAAAACTTTTGCGCTAAAAAGTTACCTAAATAAGCACCAGGAGTCGGCGTGCGTACGCGACGAAGACTCGACGCAAACTGATCCAACTAACTCAGCGTCCGAGTAA

Protein

MRFGLLTYFIVTGYTEEKPSTHFTAQLPNEPEPKSKYTCSECGKRYATSSNLSRHKQTHRSLDSVAAKRCGECGKAYVSMPALAMHVLTHQLSHVCGVCGKLFSRPWLLQGHLRSHTGEKPYGCAHCGKAFADRSNLRAHMQTHSSDKNFECSRCHKTFALKSYLNKHQESACVRDEDSTQTDPTNSASE

Uniprot

H9ITM7   A0A2H1VMY7   A0A194Q4X8   A0A212FHG7   A0A2A4JKY9   A0A0L7LPH5   + More
B4IQF9   A0A1A9VHL8   A0A1A9Y6T0   A0A1A9WFL1   A0A1B0GHZ9   A0A1W4W4A2   W8B2J3   A0A336LME3   A0A151X554   A0A2A3E6U8   A0A1I8MK93   A0A1B0AG02   A0A1B0BFN9   A0A1B0FLQ4   A0A1I8PS35   A0A0K8WAE2   N6UMC5   H9ITM4   A0A2A4K0J3   A0A2P8XGZ0   A0A1J1J3U5   B0WC65   B3M8D9   A0A0L7R881   Q16WH8   Q16GJ4   A0A182LW98   A0A1B0CZS2   K7J758   A0A088A5D6   A0A151J103   A0A182QCM3   A0A182U354   A0A182MNH1   A0A182VEW2   Q9VZK2   B4PH90   E2AAL8   A0A2R7WAD8   A0A0A9YGV3   B4MLA6   B4HTX1   B3NG08   A0A182L419   B0XDT4   A0A0K8SYK1   A0A182U806   B4KXT2   D2CFX7   A0A154NZ76   A0A067R7G4   A0A182X260   A0A3L8DF61   A0A182GCM2   A0A182R9C6   B4IZ40   A0A3B0KHK6   B4MGX0   A0A2R7WTS6   A0A1W4X511   Q17AV8   A0A182JL86   Q7QID6   A0A026WH32   A0A2H1W3V9   B4QQ16   A0A182L416   A7URZ8   A0A195CLW3   A0A182VLL2   A0A2J7QTX5   A0A0L7LDE5   A0A3Q0JGK9   A0A2J7QC01   A0A195EWD0   A0A158NAG6   E0VW49   A0A0M4EKR5   A0A151J0J9   A0A1B6C830   E9I9M2   A0A158NAV2   A0A084WMX1   A0A182KGZ4   Q7QID3   A0A182ML19   A0A182YJF9   A0A182QU98   A0A195EWD6   A0A151I0S9   A0A182J3G9   F4X230   A0A154P117   A0A2P8YE83  

Pubmed

19121390    26354079    22118469    26227816    17994087    24495485    + More
25315136    23537049    29403074    18057021    17510324    20075255    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    17550304    20798317    25401762    20966253    18362917    19820115    24845553    30249741    26483478    12364791    14747013    17210077    24508170    22936249    21347285    20566863    21282665    24438588    25244985    21719571   

EMBL

BABH01006693    ODYU01003434    SOQ42195.1    KQ459463    KPJ00597.1    AGBW02008503    + More
OWR53191.1    NWSH01001220    PCG72072.1    JTDY01000387    KOB77423.1    CH687803    EDW44599.1    AJWK01010500    AJWK01010501    AJWK01010502    AJWK01010503    GAMC01013793    GAMC01013792    JAB92762.1    UFQS01000078    UFQT01000078    SSW99032.1    SSX19414.1    KQ982519    KYQ55511.1    KZ288364    PBC26889.1    JXJN01013610    JXJN01013611    CCAG010008464    GDHF01004188    JAI48126.1    APGK01026570    APGK01026571    KB740635    ENN79867.1    BABH01006684    BABH01006685    NWSH01000326    PCG77438.1    PYGN01002167    PSN31270.1    CVRI01000067    CRL06452.1    DS231886    EDS43310.1    CH902618    EDV38874.2    KPU77696.1    KQ414633    KOC67054.1    CH477566    EAT38919.1    CH478270    EAT33362.1    AXCM01013675    AJVK01020966    AAZX01006567    KQ980629    KYN15017.1    AXCN02000573    AXCM01006610    AE014296    BT025207    AAF47819.1    ABF17898.1    AGB94085.1    CM000159    EDW93327.1    GL438129    EFN69525.1    KK854534    PTY16642.1    GBHO01012196    GBHO01012195    JAG31408.1    JAG31409.1    CH963847    EDW73364.2    CH480817    EDW50392.1    CH954178    EDV50837.1    DS232780    EDS45611.1    GBRD01007458    JAG58363.1    CH933809    EDW17604.1    DS497672    EFA13196.1    KQ434783    KZC04937.1    KK852893    KDR14226.1    QOIP01000009    RLU19105.1    JXUM01054252    KQ561812    KXJ77449.1    CH916366    EDV95562.1    OUUW01000009    SPP85226.1    CH940752    EDW62906.1    KK855425    PTY22520.1    CH477330    EAT43350.1    AAAB01008807    EAA04171.4    KK107231    EZA54981.1    ODYU01006160    SOQ47771.1    CM000363    CM002912    EDX09136.1    KMY97459.1    EDO64791.1    KQ977642    KYN01064.1    NEVH01011192    PNF32025.1    JTDY01001597    KOB73425.1    NEVH01016293    PNF26107.1    KQ981954    KYN32197.1    ADTU01010293    ADTU01010294    DS235817    EEB17605.1    CP012525    ALC44826.1    KYN15018.1    GEDC01027829    JAS09469.1    GL761846    EFZ22696.1    ADTU01010295    ADTU01010296    ADTU01010297    ADTU01010298    ATLV01024523    KE525352    KFB51565.1    EAA04354.4    AXCM01017749    KYN32199.1    KQ976600    KYM79455.1    GL888565    EGI59446.1    KZC04938.1    PYGN01000665    PSN42580.1   

Proteomes

UP000005204    UP000053268    UP000007151    UP000218220    UP000037510    UP000001292    + More
UP000078200    UP000092443    UP000091820    UP000092461    UP000192221    UP000075809    UP000242457    UP000095301    UP000092445    UP000092460    UP000092444    UP000095300    UP000019118    UP000245037    UP000183832    UP000002320    UP000007801    UP000053825    UP000008820    UP000075883    UP000092462    UP000002358    UP000005203    UP000078492    UP000075886    UP000075902    UP000075903    UP000000803    UP000002282    UP000000311    UP000007798    UP000008711    UP000075882    UP000009192    UP000007266    UP000076502    UP000027135    UP000076407    UP000279307    UP000069940    UP000249989    UP000075900    UP000001070    UP000268350    UP000008792    UP000192223    UP000075880    UP000007062    UP000053097    UP000000304    UP000078542    UP000235965    UP000079169    UP000078541    UP000005205    UP000009046    UP000092553    UP000030765    UP000075881    UP000076408    UP000078540    UP000007755   

PRIDE

H9ITM7    H9ITM4   

Pfam

PF00096   zf-C2H2

Interpro

IPR013087   Znf_C2H2_type        + More
IPR036236   Znf_C2H2_sf       

SUPFAM

SSF57667   SSF57667       

ProteinModelPortal

H9ITM7   A0A2H1VMY7   A0A194Q4X8   A0A212FHG7   A0A2A4JKY9   A0A0L7LPH5   + More
B4IQF9   A0A1A9VHL8   A0A1A9Y6T0   A0A1A9WFL1   A0A1B0GHZ9   A0A1W4W4A2   W8B2J3   A0A336LME3   A0A151X554   A0A2A3E6U8   A0A1I8MK93   A0A1B0AG02   A0A1B0BFN9   A0A1B0FLQ4   A0A1I8PS35   A0A0K8WAE2   N6UMC5   H9ITM4   A0A2A4K0J3   A0A2P8XGZ0   A0A1J1J3U5   B0WC65   B3M8D9   A0A0L7R881   Q16WH8   Q16GJ4   A0A182LW98   A0A1B0CZS2   K7J758   A0A088A5D6   A0A151J103   A0A182QCM3   A0A182U354   A0A182MNH1   A0A182VEW2   Q9VZK2   B4PH90   E2AAL8   A0A2R7WAD8   A0A0A9YGV3   B4MLA6   B4HTX1   B3NG08   A0A182L419   B0XDT4   A0A0K8SYK1   A0A182U806   B4KXT2   D2CFX7   A0A154NZ76   A0A067R7G4   A0A182X260   A0A3L8DF61   A0A182GCM2   A0A182R9C6   B4IZ40   A0A3B0KHK6   B4MGX0   A0A2R7WTS6   A0A1W4X511   Q17AV8   A0A182JL86   Q7QID6   A0A026WH32   A0A2H1W3V9   B4QQ16   A0A182L416   A7URZ8   A0A195CLW3   A0A182VLL2   A0A2J7QTX5   A0A0L7LDE5   A0A3Q0JGK9   A0A2J7QC01   A0A195EWD0   A0A158NAG6   E0VW49   A0A0M4EKR5   A0A151J0J9   A0A1B6C830   E9I9M2   A0A158NAV2   A0A084WMX1   A0A182KGZ4   Q7QID3   A0A182ML19   A0A182YJF9   A0A182QU98   A0A195EWD6   A0A151I0S9   A0A182J3G9   F4X230   A0A154P117   A0A2P8YE83  

PDB

3W5K     E-value=1.83562e-34,     Score=361

KEGG

101738623    K09219 scratch | (RefSeq) transcriptional repressor scratch 2-like

GO

GO:0003676   GO:0005634   GO:0003677   GO:0000122   GO:0045892   GO:0043565   GO:0045893   GO:0003700   GO:0045944   GO:0046872   GO:0000413   GO:0016020   GO:0043401   GO:0003707   GO:0007169   GO:0016021  

SignalP

Position:   1 - 15,         Likelihood:  0.597116

 

 

Length:

190

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00704

Exp number, first 60 AAs:

0

Total prob of N-in:

0.02127

outside

1  -  190

 

 

Pi

6.493262

Theta

19.305799

Tajima's D

-0.554283

CLR

0.056753

CSRT

0.225838708064597

Interpretation

Uncertain