SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO00165
Pre Gene Modal
BGIBMGA000604
Annotation
PREDICTED:_zinc_finger_protein_OZF-like_[Bombyx_mori]
Transcription factor
Location in the cell
Nuclear   Reliability : 3.483
 

Sequence

CDS
ATGTTCGAAACTGAGCCTCGGCCGGCGCAGTACGCGGAGCTGGGCAGCGCGCCGCTGTCAGAGCGCTCCGCAGCTGACACGGAGGCGGCACACGAACTGTTGTCTTTGGCTCAAAGCGTGCCGCCCCTGCCGCCCGCCGCCGTCGTCACACTGCTGCAAGCGCCCGAGCCTACACCCCTCGTGCCAGTCTACACCTACACTCTGCAGCCGACCAACATCTACATCCTTTCCGAAGAGCCGCCCGAGCCAACTATCTACCACGCTGTTCAAACGGTCACCCCTATACAGACCGTCGAGTACGCAGCCATTGAGCCGCAAGTTAATTATGTTGCTTATCAACCCCAGATACCGCTTGAGTATGTCACTGATTGCCGAGGACAACTCTTGCCACCGCCGCCGCCACCGCCACCGCCACCGCCACCACCACAACCGCAACCAGAAACATCACCGCCGGACCCTAAACCTGAACCGAAATCCGAACCTCGAGATCCACCTCAGACACCTCGAGCTCCGCAGTCACCATCAACAAAGGACAAGGCTGCTAAATATGACTGCAACGAGTGTGGCAAGCGGTATGCCACTTCCTCAAATCTATCGCGTCACAAGCAGACCCACCGCAGTCTTGATTCTGTGGCGGCGAAGCGATGCCCAGAGTGCGGTAAGGCTTACGTTTCCATGCCAGCTTTGGCAATGCACGTGCTGACTCATCGCATGGGTCATATATGTGGTGTGTGCGGCAAGCATTTCTCTCGGCCGTGGCTCCTGCGAGGCCACGTGCGCTCACATACAGGAGAGAAGCCATACAACTGTGCTTCCTGCGGCAAGTCATTTGCCGATCGCTCTAACCTGCGGGCTCATCTGCAGACGCACTCTTCGGATAAGAAATACGAATGCTCACGCTGCCACAAGTCGTTCGCTCTCAAGAGCTATCTCAACAAGCATCAGGAGGCGGCCTGCGTGCGTTCCGACGACGAGTAA
Protein
MFETEPRPAQYAELGSAPLSERSAADTEAAHELLSLAQSVPPLPPAAVVTLLQAPEPTPLVPVYTYTLQPTNIYILSEEPPEPTIYHAVQTVTPIQTVEYAAIEPQVNYVAYQPQIPLEYVTDCRGQLLPPPPPPPPPPPPPQPQPETSPPDPKPEPKSEPRDPPQTPRAPQSPSTKDKAAKYDCNECGKRYATSSNLSRHKQTHRSLDSVAAKRCPECGKAYVSMPALAMHVLTHRMGHICGVCGKHFSRPWLLRGHVRSHTGEKPYNCASCGKSFADRSNLRAHLQTHSSDKKYECSRCHKSFALKSYLNKHQEAACVRSDDE

Summary

Pfam
PF00096   zf-C2H2
Interpro
IPR036236   Znf_C2H2_sf        + More
IPR013087   Znf_C2H2_type       
SUPFAM
SSF57667   SSF57667       
PDB
3W5K     E-value=7.35319e-32,     Score=342

Ontologies

Topology

Length:
325
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00324
Exp number, first 60 AAs:
0.00073
Total prob of N-in:
0.01089
outside
1  -  325
 
 

Population Genetic Test Statistics

Pi
1.880942
Theta
6.631129
Tajima's D
-2.124904
CLR
0.009361
CSRT
0.00769961501924904
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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