Silkworm Genome Informatics Database

Gene

KWMTBOMO00050

Pre Gene Modal

BGIBMGA002090

Annotation

PREDICTED:_zinc_finger_protein_135_[Bombyx_mori]

Location

Bomo_Chr1(+):1435691-1439441 View in EpiBrowser

Transcription factor

zf-C2H2

Location in the cell

Nuclear Reliability : 4.173

CDS

ATGGCACAGGCGGCAGGCTCGCCGCCAAACACGCAGAATCTCAACAAACGCCAGCGTCTCTCGCGTCTCCTCGACAAACTAAGTGTGCAGTTGCAAAACAATAATTTGTATCCACCAACACAACATTGGCCAGCGCTGAACCCACCATTCCAAAACAATAAGCCACCTGCAGATGAGCCTTTAGATCTCTCGGTTAAGCACGAGCAGCCATCGCCGGCCCCCGAGATAACGTATACATGCGAAACTTGCGGCCAAACCTTCACCATGCACGACCGCCTCGCCAAACATATTGCTTCTCGACACAGGAATCGCACTCCGGAGGCGGCGCGGCTATATGAATGCGAGGTATGCCTGAGACGGTTTGCTCGCTCGGACATGCTGACCCGGCACGCTCGTCTGCACAGCGGCCTCAAGCCGTACTCGTGCTCTGCCTGCGGTCAGGTGTTCTCCCGCTCGGATCACCTCGCAACCCACCAGCGCACACACACAGGAGAAAAGCCCTACCGGTGCCCGTCCTGCCCATACGCTGCTTGCCGCCGCGACATGATCACTCGCCACATGAGGACGCACTCAAGGCGACCGCAGCCTGCTTAA

Protein

MAQAAGSPPNTQNLNKRQRLSRLLDKLSVQLQNNNLYPPTQHWPALNPPFQNNKPPADEPLDLSVKHEQPSPAPEITYTCETCGQTFTMHDRLAKHIASRHRNRTPEAARLYECEVCLRRFARSDMLTRHARLHSGLKPYSCSACGQVFSRSDHLATHQRTHTGEKPYRCPSCPYAACRRDMITRHMRTHSRRPQPA

Uniprot

H9IXV7 A0A194PTL2 A0A194QUA6 A0A212EQM7 A0A2A4JHN5 A0A2H1V0F0 + More
A0A0L7LIP6 A0A182KTL1 A0A182U6V4 Q7Q197 A0A182LY17 Q16IU4 A0A182QC60 A0A182W912 A0A182HF64 A0A182V5A3 A0A0T6BFA4 A0A182RR75 A0A084W8M0 A0A182J142 T1IMV7 A0A1J1IJ70 A0A087SX21 A0A1D2N5N6 A0A336LM13 A0A2S2NBJ9

Pubmed

19121390 26354079 22118469 26227816 20966253 12364791 + More
14747013 17210077 17510324 26483478 24438588 27289101

EMBL

BABH01015708 KQ459593 KPI96751.1 KQ461108 KPJ09052.1 AGBW02013268 + More
OWR43788.1 NWSH01001349 PCG71585.1 ODYU01000097 SOQ34289.1 JTDY01000959 KOB75285.1 AAAB01008980 EAA14412.4 AXCM01002020 CH478051 EAT34190.1 AXCN02000660 JXUM01038447 KQ561165 KXJ79494.1 LJIG01000918 KRT86022.1 ATLV01021495 KE525319 KFB46564.1 JH431096 CVRI01000048 CRK99110.1 KK112342 KFM57410.1 LJIJ01000199 ODN00564.1 UFQT01000016 SSX17791.1 GGMR01001888 MBY14507.1

Proteomes

UP000005204 UP000053268 UP000053240 UP000007151 UP000218220 UP000037510 + More
UP000075882 UP000075902 UP000007062 UP000075883 UP000008820 UP000075886 UP000075920 UP000069940 UP000249989 UP000075903 UP000075900 UP000030765 UP000075880 UP000183832 UP000054359 UP000094527

PRIDE

H9IXV7

Pfam

PF00096 zf-C2H2

Interpro

IPR013087 Znf_C2H2_type + More
IPR036236 Znf_C2H2_sf

SUPFAM

SSF57667 SSF57667

ProteinModelPortal

H9IXV7 A0A194PTL2 A0A194QUA6 A0A212EQM7 A0A2A4JHN5 A0A2H1V0F0 + More
A0A0L7LIP6 A0A182KTL1 A0A182U6V4 Q7Q197 A0A182LY17 Q16IU4 A0A182QC60 A0A182W912 A0A182HF64 A0A182V5A3 A0A0T6BFA4 A0A182RR75 A0A084W8M0 A0A182J142 T1IMV7 A0A1J1IJ70 A0A087SX21 A0A1D2N5N6 A0A336LM13 A0A2S2NBJ9

PDB

2I13 E-value=2.51322e-18, Score=222

KEGG

101741268 no KO assigned | (RefSeq) zinc finger protein 135

GO

GO:0003676 GO:0045944 GO:0003700 GO:0044212 GO:0005654 GO:0046872 GO:0006313 GO:0008081 GO:0005524 GO:0048013 GO:0005003 GO:0005887 GO:0007169 GO:0016021

Length:

197

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00018

Exp number, first 60 AAs:

0

Total prob of N-in:

0.05236

outside

1 - 197

Pi

15.472102

Theta

18.831409

Tajima's D

-0.403015

CLR

0.453655

CSRT

0.262186890655467

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics