SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO00050
Pre Gene Modal
BGIBMGA002090
Annotation
PREDICTED:_zinc_finger_protein_135_[Bombyx_mori]
Transcription factor
Location in the cell
Nuclear   Reliability : 4.173
 

Sequence

CDS
ATGGCACAGGCGGCAGGCTCGCCGCCAAACACGCAGAATCTCAACAAACGCCAGCGTCTCTCGCGTCTCCTCGACAAACTAAGTGTGCAGTTGCAAAACAATAATTTGTATCCACCAACACAACATTGGCCAGCGCTGAACCCACCATTCCAAAACAATAAGCCACCTGCAGATGAGCCTTTAGATCTCTCGGTTAAGCACGAGCAGCCATCGCCGGCCCCCGAGATAACGTATACATGCGAAACTTGCGGCCAAACCTTCACCATGCACGACCGCCTCGCCAAACATATTGCTTCTCGACACAGGAATCGCACTCCGGAGGCGGCGCGGCTATATGAATGCGAGGTATGCCTGAGACGGTTTGCTCGCTCGGACATGCTGACCCGGCACGCTCGTCTGCACAGCGGCCTCAAGCCGTACTCGTGCTCTGCCTGCGGTCAGGTGTTCTCCCGCTCGGATCACCTCGCAACCCACCAGCGCACACACACAGGAGAAAAGCCCTACCGGTGCCCGTCCTGCCCATACGCTGCTTGCCGCCGCGACATGATCACTCGCCACATGAGGACGCACTCAAGGCGACCGCAGCCTGCTTAA
Protein
MAQAAGSPPNTQNLNKRQRLSRLLDKLSVQLQNNNLYPPTQHWPALNPPFQNNKPPADEPLDLSVKHEQPSPAPEITYTCETCGQTFTMHDRLAKHIASRHRNRTPEAARLYECEVCLRRFARSDMLTRHARLHSGLKPYSCSACGQVFSRSDHLATHQRTHTGEKPYRCPSCPYAACRRDMITRHMRTHSRRPQPA

Summary

Pfam
PF00096   zf-C2H2
Interpro
IPR013087   Znf_C2H2_type        + More
IPR036236   Znf_C2H2_sf       
SUPFAM
SSF57667   SSF57667       
PDB
2I13     E-value=2.51322e-18,     Score=222

Ontologies

Topology

Length:
197
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00018
Exp number, first 60 AAs:
0
Total prob of N-in:
0.05236
outside
1  -  197
 
 

Population Genetic Test Statistics

Pi
15.472102
Theta
18.831409
Tajima's D
-0.403015
CLR
0.453655
CSRT
0.262186890655467
Interpretation
Uncertain
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