Silkworm Genome Informatics Database

Found: 1 items

Gene	Transcription Factor Family	Full Seq Evalue	Best Domain Evalue	Domain Number	Alignment Detail
KWMTBOMO16869	zf-C2H2	0.00084	0.069	4	+ View
HMM length of domain: 23 aa c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs. i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. Domain annotation for each sequence: # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to -- ----- ---- -------- -------- ------- ------ ------- ------ --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 4.0 1.0 1.3 77 13 23 2 13 2 13.6 0.1 0.0012 0.069 3 23 22 42 3 3.5 3.3 1.7 1e+02 1 19 48 66 4 8.3 0.2 0.054 3.2 1 14 75 88 Alignments for each domain: == domain 1 score: 4.0 bits; conditional E-value: 1.3 HHHHHHHHHC.C CS zf-C2H2 13 ksnLkrHirt.H 23 +s+L++Hi + H KWMTBOMO16869 2 SSHLNTHILVvH 13 699***9988 PP == domain 2 score: 13.6 bits; conditional E-value: 0.0012 ETTTTEEESSHHHHHHHHHCC CS zf-C2H2 3 CpdCgksFkrksnLkrHirtH 23 C Cg+ F +ks L +H+ +H KWMTBOMO16869 22 CIACGRGFISKSRLDVHMAVH 42 556************99 PP == domain 3 score: 3.5 bits; conditional E-value: 1.7 EEETTTTEEESSHHHHHHH CS zf-C2H2 1 ykCpdCgksFkrksnLkrH 19 +kC+ C k+F++k ++ H KWMTBOMO16869 48 HKCSFCIKRFRTKICMQLH 66 79******9998888 PP == domain 4 score: 8.3 bits; conditional E-value: 0.054 EEETTTTEEESSHH CS zf-C2H2 1 ykCpdCgksFkrks 14 y+C++Cgk F++k KWMTBOMO16869 75 YECSECGKWFSSKN 88 99****998875 PP

Gene

Transcription Factor Family

Full Seq Evalue

Best Domain Evalue

Domain Number

Alignment Detail

KWMTBOMO16869

zf-C2H2

0.00084

0.069

+ View

						  HMM length of domain: 23 aa

c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs.
i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. 
Domain annotation for each sequence:
#	score	bias	c-Evalue	i-Evalue	hmmfrom	hmm to	alifrom	ali to
--	-----	----	--------	--------	-------	------	-------	------
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
1	4.0	1.0	1.3	77	13	23	2	13
2	13.6	0.1	0.0012	0.069	3	23	22	42
3	3.5	3.3	1.7	1e+02	1	19	48	66
4	8.3	0.2	0.054	3.2	1	14	75	88

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 1.3
                   HHHHHHHHHC.C CS
        zf-C2H2 13 ksnLkrHirt.H 23
                   +s+L++Hi + H
  KWMTBOMO16869  2 SSHLNTHILVvH 13
                   699*****9988 PP

  == domain 2  score: 13.6 bits;  conditional E-value: 0.0012
                   ETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2  3 CpdCgksFkrksnLkrHirtH 23
                   C  Cg+ F +ks L +H+ +H
  KWMTBOMO16869 22 CIACGRGFISKSRLDVHMAVH 42
                   556****************99 PP

  == domain 3  score: 3.5 bits;  conditional E-value: 1.7
                   EEETTTTEEESSHHHHHHH CS
        zf-C2H2  1 ykCpdCgksFkrksnLkrH 19
                   +kC+ C k+F++k  ++ H
  KWMTBOMO16869 48 HKCSFCIKRFRTKICMQLH 66
                   79**********9998888 PP

  == domain 4  score: 8.3 bits;  conditional E-value: 0.054
                   EEETTTTEEESSHH CS
        zf-C2H2  1 ykCpdCgksFkrks 14
                   y+C++Cgk F++k 
  KWMTBOMO16869 75 YECSECGKWFSSKN 88
                   99******998875 PP