HMM length of domain: 23 aa

c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs.
i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. 
Domain annotation for each sequence:
#	score	bias	c-Evalue	i-Evalue	hmmfrom	hmm to	alifrom	ali to
--	-----	----	--------	--------	-------	------	-------	------
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
1	8.0	8.9	0.066	4	1	23	237	259
2	1.9	1.0	5.8	3.5e+02	2	23	281	301
3	16.4	0.4	0.00015	0.0088	1	23	309	331
4	6.6	1.4	0.19	11	1	23	349	372
5	10.6	6.3	0.0097	0.58	1	23	382	404
6	15.8	0.7	0.00023	0.013	2	23	411	432
7	20.2	0.5	8.7e-06	0.00052	2	23	439	460
8	23.3	1.6	9.3e-07	5.6e-05	1	23	466	488
9	4.4	0.4	0.9	54	1	13	494	506

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.066
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y+C +C k +k ks L +H++tH
  KWMTBOMO16653 237 YRCCICLKNCKFKSTLLKHYKTH 259
                    9*********************9 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 5.8
                    EETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHirtH 23 
                    kC+ C ks   k+    H + H
  KWMTBOMO16653 281 KCTRCRKSV-KKDTWAEHWQNH 301
                    8999*9999.777777776666 PP

  == domain 3  score: 16.4 bits;  conditional E-value: 0.00015
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y+C  C+ksF+++ + ++H  +H
  KWMTBOMO16653 309 YRCALCDKSFTSSQQVMVHGLSH 331
                    9******************9888 PP

  == domain 4  score: 6.6 bits;  conditional E-value: 0.19
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    y+C+ C++ F     L++H+   H
  KWMTBOMO16653 349 YVCDFCPEEFMYMRCLQAHRTNaH 372
                    99*****************98777 PP

  == domain 5  score: 10.6 bits;  conditional E-value: 0.0097
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    ++C +C++ F +  +L+rH +tH
  KWMTBOMO16653 382 HRCWKCSRQFAHLNSLRRHFMTH 404
                    79*******************99 PP

  == domain 6  score: 15.8 bits;  conditional E-value: 0.00023
                    EETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHirtH 23 
                     C++Cgk  +++++Lk Hi++H
  KWMTBOMO16653 411 LCNVCGKAMSSRDHLKLHINIH 432
                    5*******************99 PP

  == domain 7  score: 20.2 bits;  conditional E-value: 8.7e-06
                    EETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHirtH 23 
                    +C+ Cgk F  ksnLk H r+H
  KWMTBOMO16653 439 VCSTCGKGFVKKSNLKLHERVH 460
                    6*******************99 PP

  == domain 8  score: 23.3 bits;  conditional E-value: 9.3e-07
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y+C++Cgk F+++s L+ H r H
  KWMTBOMO16653 466 YVCSHCGKAFSQRSTLVIHERYH 488
                    9********************99 PP

  == domain 9  score: 4.4 bits;  conditional E-value: 0.9
                    EEETTTTEEESSH CS
        zf-C2H2   1 ykCpdCgksFkrk 13 
                    y+C  Cg+ F  k
  KWMTBOMO16653 494 YVCALCGRGFVAK 506
                    99*******9765 PP