HMM length of domain: 23 aa

c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs.
i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. 
Domain annotation for each sequence:
#	score	bias	c-Evalue	i-Evalue	hmmfrom	hmm to	alifrom	ali to
--	-----	----	--------	--------	-------	------	-------	------
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
1	3.5	0.2	1.7	1e+02	3	23	476	496
2	14.5	3.9	0.00056	0.034	1	23	501	523
3	6.8	8.1	0.16	9.7	1	23	529	551
4	18.1	1.6	4.3e-05	0.0025	1	23	570	593

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 1.7
                    ETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   3 CpdCgksFkrksnLkrHirtH 23 
                    C  C++s  +  +++rH r H
  KWMTBOMO14682 476 CLQCKYSAADELDYRRHVRAH 496
                    999****************98 PP

  == domain 2  score: 14.5 bits;  conditional E-value: 0.00056
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    ++C+ Cg++  ++ +L+rH r+H
  KWMTBOMO14682 501 HVCHTCGYTTASRPQLERHSRKH 523
                    79********************9 PP

  == domain 3  score: 6.8 bits;  conditional E-value: 0.16
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    +kC+ C+ + k+  +L  H+++H
  KWMTBOMO14682 529 FKCHLCDFKAKHHMSLIYHMKSH 551
                    8*********************9 PP

  == domain 4  score: 18.1 bits;  conditional E-value: 4.3e-05
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    y C +C++s  r+s+L+rH+++ H
  KWMTBOMO14682 570 YSCLECTYSTDRWSDLNRHRSRrH 593
                    89*******************999 PP