HMM length of domain: 23 aa

c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs.
i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. 
Domain annotation for each sequence:
#	score	bias	c-Evalue	i-Evalue	hmmfrom	hmm to	alifrom	ali to
--	-----	----	--------	--------	-------	------	-------	------
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
1	2.8	6.0	2.9	1.7e+02	2	23	227	249
2	16.3	0.6	0.00015	0.0092	1	23	255	278
3	11.5	0.4	0.005	0.3	3	23	286	307
4	1.9	3.3	5.6	3.3e+02	1	20	313	332
5	7.4	4.1	0.1	6.2	1	23	341	363
6	14.9	0.2	0.00043	0.026	2	23	382	403
7	15.0	2.1	0.0004	0.024	1	23	409	431
8	9.6	4.9	0.02	1.2	1	23	454	477
9	18.8	0.8	2.5e-05	0.0015	2	23	513	535
10	11.9	0.4	0.004	0.24	3	23	543	563
11	14.6	3.2	0.00053	0.032	1	23	569	591
12	19.5	0.5	1.5e-05	0.00088	1	23	597	620

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 2.9
                    EETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHirt.H 23 
                    +C++Cg +++    ++ H +t H
  KWMTBOMO14578 227 VCTHCGNRYNKYCTFRYHVKTkH 249
                    7*******************999 PP

  == domain 2  score: 16.3 bits;  conditional E-value: 0.00015
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    +kCp C++sF ++  +++H  + H
  KWMTBOMO14578 255 FKCPRCPESFMTPATFTVHKLReH 278
                    8******************99988 PP

  == domain 3  score: 11.5 bits;  conditional E-value: 0.005
                    ETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   3 CpdCgksFkrksnLkrHirt.H 23 
                    C+ C+ +F++k +L++H+   H
  KWMTBOMO14578 286 CNACKGVFNSKIQLRKHMDNfH 307
                    99****************8877 PP

  == domain 4  score: 1.9 bits;  conditional E-value: 5.6
                    EEETTTT.EEESSHHHHHHHH CS
        zf-C2H2   1 ykCpdCg.ksFkrksnLkrHi 20 
                    ykC+ C+ +sF + + + +H 
  KWMTBOMO14578 313 YKCDFCDyESF-SFEGMYKHK 332
                    9******6666.555555565 PP

  == domain 5  score: 7.4 bits;  conditional E-value: 0.1
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y C  C+ksF r+  L  H r+H
  KWMTBOMO14578 341 YHCRFCKKSFLRRATLSLHERIH 363
                    89*******************99 PP

  == domain 6  score: 14.9 bits;  conditional E-value: 0.00043
                    EETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHirtH 23 
                    +C++C+k F +  +Lk H++tH
  KWMTBOMO14578 382 VCGVCDKGFFNDVSLKLHMMTH 403
                    6********************9 PP

  == domain 7  score: 15.0 bits;  conditional E-value: 0.0004
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    ++C++Cg++F+  snLk H ++H
  KWMTBOMO14578 409 HECGHCGRRFRWESNLKDHVKIH 431
                    78*******************99 PP

  == domain 8  score: 9.6 bits;  conditional E-value: 0.02
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    y+C+ Cg+sFk+    ++H+   H
  KWMTBOMO14578 454 YTCKTCGRSFKNIPCIRQHYTHvH 477
                    9***********999999987666 PP

  == domain 9  score: 18.8 bits;  conditional E-value: 2.5e-05
                    EETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHirt.H 23 
                    +C++Cgk+F+ +s + +H++  H
  KWMTBOMO14578 513 TCGVCGKKFPYQSKMLKHQKNvH 535
                    7*******************988 PP

  == domain 10  score: 11.9 bits;  conditional E-value: 0.004
                    ETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   3 CpdCgksFkrksnLkrHirtH 23 
                    C++C+++F ++ nL +H  +H
  KWMTBOMO14578 543 CSVCDMKFFSRTNLAQHSIKH 563
                    *****************9888 PP

  == domain 11  score: 14.6 bits;  conditional E-value: 0.00053
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    +kC+ Cgk Fk + nL++H r+H
  KWMTBOMO14578 569 HKCDFCGKGFKWRKNLRTHVRMH 591
                    79********************9 PP

  == domain 12  score: 19.5 bits;  conditional E-value: 1.5e-05
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    y C++C++ F ++ +Lk H+++ H
  KWMTBOMO14578 597 YACSVCDEAFVQQTSLKYHMMKkH 620
                    88*******************999 PP