HMM length of domain: 23 aa

c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs.
i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. 
Domain annotation for each sequence:
#	score	bias	c-Evalue	i-Evalue	hmmfrom	hmm to	alifrom	ali to
--	-----	----	--------	--------	-------	------	-------	------
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
1	2.0	0.4	5.5	3.3e+02	1	23	215	237
2	11.5	4.6	0.005	0.3	1	23	243	265
3	4.5	1.0	0.85	51	1	23	277	299
4	15.5	1.5	0.00028	0.017	1	23	523	545
5	11.2	0.2	0.0066	0.39	2	23	551	573
6	4.8	1.5	0.69	41	2	23	582	602
7	16.4	1.1	0.00015	0.0089	3	23	607	627

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 5.5
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y+C +C ++ ++ ++L +H + H
  KWMTBOMO14284 215 YECLKCCEVLPNVESLLNHEKLH 237
                    89*****************9999 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 0.005
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y C +Cgk ++ +++ k+H  tH
  KWMTBOMO14284 243 YHCRICGKAYPKRHQVKKHFITH 265
                    89*****************9999 PP

  == domain 3  score: 4.5 bits;  conditional E-value: 0.85
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    + C++C++  k    + +Hi +H
  KWMTBOMO14284 277 FSCKICNYNTKEYNVYLQHIEKH 299
                    89********9999999999998 PP

  == domain 4  score: 15.5 bits;  conditional E-value: 0.00028
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y+Cp C k F + + LkrHi +H
  KWMTBOMO14284 523 YTCPLCYKNFISDYFLKRHIVRH 545
                    9*******************999 PP

  == domain 5  score: 11.2 bits;  conditional E-value: 0.0066
                    EETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHirt.H 23 
                    +C+ C ++Fk+k n+  H ++ H
  KWMTBOMO14284 551 QCGACLQVFKTKFNFIEHVKSaH 573
                    7999***************9988 PP

  == domain 6  score: 4.8 bits;  conditional E-value: 0.69
                    EETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHirtH 23 
                    kC++C +   +   Lk+H r H
  KWMTBOMO14284 582 KCEICERHV-SLKKLKSHTRAH 602
                    8********.**********98 PP

  == domain 7  score: 16.4 bits;  conditional E-value: 0.00015
                    ETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   3 CpdCgksFkrksnLkrHirtH 23 
                    C  Cgk+F +  ++++H+ +H
  KWMTBOMO14284 607 CVLCGKVFVSVKHYRAHMERH 627
                    99******************9 PP