| Gene | Transcription Factor Family | Full Seq Evalue | Best Domain Evalue | Domain Number | Alignment Detail |
|---|---|---|---|---|---|
| KWMTBOMO14273 | zf-C2H2 | 4.5e-29 | 0.00026 | 10 | + View |
HMM length of domain: 23 aa
c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs.
i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified.
Domain annotation for each sequence:
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to
-- ----- ---- -------- -------- ------- ------ ------- ------
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 9.8 1.0 0.017 1 2 23 94 116
2 4.9 0.0 0.65 39 1 19 119 137
3 8.5 6.0 0.046 2.8 1 23 144 167
4 18.4 1.5 3.4e-05 0.002 1 23 170 192
5 14.6 0.8 0.00053 0.032 2 21 197 216
6 16.7 0.6 0.00012 0.0071 2 23 237 259
7 21.2 1.1 4.3e-06 0.00026 1 23 265 287
8 18.7 0.7 2.7e-05 0.0016 1 23 293 315
9 11.7 0.5 0.0045 0.27 1 23 321 344
10 18.8 2.6 2.6e-05 0.0015 3 23 351 371
Alignments for each domain:
== domain 1 score: 9.8 bits; conditional E-value: 0.017
EETTTTEEESSHHHHHHHHHC.C CS
zf-C2H2 2 kCpdCgksFkrksnLkrHirt.H 23
kC +C++ F++ +Lk H t H
KWMTBOMO14273 94 KCRECDEIFCNIQQLKEHNETtH 116
8*****************88877 PP
== domain 2 score: 4.9 bits; conditional E-value: 0.65
EEETTTTEEESSHHHHHHH CS
zf-C2H2 1 ykCpdCgksFkrksnLkrH 19
y+C++C ++F + +L H
KWMTBOMO14273 119 YTCTKCLEVFLTENDLIEH 137
9*********999999888 PP
== domain 3 score: 8.5 bits; conditional E-value: 0.046
EEETTTTEEESSHHHHHHHHHC.C CS
zf-C2H2 1 ykCpdCgksFkrksnLkrHirt.H 23
++Cp+C++ ++k +Lk+H+ H
KWMTBOMO14273 144 FTCPECHQYRCTKKSLKKHQDEqH 167
89*****9999********98777 PP
== domain 4 score: 18.4 bits; conditional E-value: 3.4e-05
EEETTTTEEESSHHHHHHHHHCC CS
zf-C2H2 1 ykCpdCgksFkrksnLkrHirtH 23
y C++Cgk+F+ + L++H +H
KWMTBOMO14273 170 YICKGCGKTFRGLHKLQSHELRH 192
89*****************9999 PP
== domain 5 score: 14.6 bits; conditional E-value: 0.00053
EETTTTEEESSHHHHHHHHH CS
zf-C2H2 2 kCpdCgksFkrksnLkrHir 21
+Cp+Cgk + +k+ + rHi+
KWMTBOMO14273 197 TCPKCGKHYITKEFYLRHIK 216
7*****************98 PP
== domain 6 score: 16.7 bits; conditional E-value: 0.00012
EETTTTEEESSHHHHHHHHHC.C CS
zf-C2H2 2 kCpdCgksFkrksnLkrHirt.H 23
C++Cgk ++++ L++H r H
KWMTBOMO14273 237 FCDKCGKGYSTPGGLRVHERFvH 259
6*****************99877 PP
== domain 7 score: 21.2 bits; conditional E-value: 4.3e-06
EEETTTTEEESSHHHHHHHHHCC CS
zf-C2H2 1 ykCpdCgksFkrksnLkrHirtH 23
+ C++C+k F+ +s Lk H+ tH
KWMTBOMO14273 265 HICKYCNKGFTAPSYLKIHLVTH 287
67******************999 PP
== domain 8 score: 18.7 bits; conditional E-value: 2.7e-05
EEETTTTEEESSHHHHHHHHHCC CS
zf-C2H2 1 ykCpdCgksFkrksnLkrHirtH 23
++C++C ++F +k+ L H r+H
KWMTBOMO14273 293 FPCEICQRKFVSKEALLYHTRRH 315
89********************9 PP
== domain 9 score: 11.7 bits; conditional E-value: 0.0045
EEETTTTEEESSHHHHHHHHHC.C CS
zf-C2H2 1 ykCpdCgksFkrksnLkrHirt.H 23
y C C+++F + s Hi+ H
KWMTBOMO14273 321 YSCQLCDERFVNASTRAEHIKFkH 344
89******************9877 PP
== domain 10 score: 18.8 bits; conditional E-value: 2.6e-05
ETTTTEEESSHHHHHHHHHCC CS
zf-C2H2 3 CpdCgksFkrksnLkrHirtH 23
C++C+++F ++s L++H+++H
KWMTBOMO14273 351 CEICSQKFVTPSFLRQHMKKH 371
********************6 PP
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