HMM length of domain: 23 aa

c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs.
i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. 
Domain annotation for each sequence:
#	score	bias	c-Evalue	i-Evalue	hmmfrom	hmm to	alifrom	ali to
--	-----	----	--------	--------	-------	------	-------	------
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
1	11.4	0.6	0.0056	0.33	1	23	56	78
2	12.3	2.1	0.0029	0.18	1	23	104	126
3	21.7	0.2	2.9e-06	0.00017	1	23	134	156
4	20.4	0.3	7.8e-06	0.00047	3	23	164	184
5	9.6	3.5	0.021	1.3	1	23	190	212
6	15.1	4.3	0.00037	0.022	1	23	218	240
7	7.7	1.6	0.083	5	2	23	250	271
8	23.3	1.5	9e-07	5.4e-05	1	23	283	306

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.0056
                   EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2  1 ykCpdCgksFkrksnLkrHirtH 23
                   y+C++C+ +F   + L  H + H
  KWMTBOMO14120 56 YRCDVCDLTFQAMDYLILHKKFH 78
                   9******************9987 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 0.0029
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    +kC+ C+ + +++++L  H ++H
  KWMTBOMO14120 104 FKCDQCDVKVNSQYHLDIHKSKH 126
                    8********************99 PP

  == domain 3  score: 21.7 bits;  conditional E-value: 2.9e-06
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y C++C++sF     Lk+H++tH
  KWMTBOMO14120 134 YICEVCDRSFVAAQFLKSHMQTH 156
                    89********************9 PP

  == domain 4  score: 20.4 bits;  conditional E-value: 7.8e-06
                    ETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   3 CpdCgksFkrksnLkrHirtH 23 
                    C+ C+ksF+ +  Lk H++ H
  KWMTBOMO14120 164 CELCNKSFTGQAYLKLHMQLH 184
                    *******************99 PP

  == domain 5  score: 9.6 bits;  conditional E-value: 0.021
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    +kC++C  + ++k  Lk H+++H
  KWMTBOMO14120 190 FKCSKCEDMLPTKNCLKIHMKKH 212
                    8*********************9 PP

  == domain 6  score: 15.1 bits;  conditional E-value: 0.00037
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    +kC++C+k F +k  ++rH++tH
  KWMTBOMO14120 218 FKCDYCHKLFVSKITMERHRQTH 240
                    8*********************9 PP

  == domain 7  score: 7.7 bits;  conditional E-value: 0.083
                    EETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHirt.H 23 
                    kC+ C+++  ++ +L++Hi + H
  KWMTBOMO14120 250 KCTQCDRTM-HSTLLRTHIARaH 271
                    8********.**********999 PP

  == domain 8  score: 23.3 bits;  conditional E-value: 9e-07
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    ykC+ CgksF  k nL+ Hir+ H
  KWMTBOMO14120 283 YKCTTCGKSFIVKINLNLHIRVcH 306
                    9********************999 PP