HMM length of domain: 23 aa

c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs.
i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. 
Domain annotation for each sequence:
#	score	bias	c-Evalue	i-Evalue	hmmfrom	hmm to	alifrom	ali to
--	-----	----	--------	--------	-------	------	-------	------
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
1	9.3	4.3	0.027	1.6	1	23	354	376
2	17.6	3.9	6.1e-05	0.0037	1	23	420	443
3	19.2	5.6	1.9e-05	0.0011	1	23	458	480
4	17.1	1.6	8.4e-05	0.0051	1	23	485	507
5	21.1	2.5	4.6e-06	0.00028	1	23	516	538
6	17.0	0.9	9.3e-05	0.0056	1	23	544	567
7	8.5	1.3	0.048	2.9	1	11	573	583
8	7.9	4.2	0.073	4.3	1	23	604	627

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.027
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y+Cp+C+ +F+++  +  H + H
  KWMTBOMO14025 354 YECPHCSLMFCNPKRFLIHTKWH 376
                    99******************998 PP

  == domain 2  score: 17.6 bits;  conditional E-value: 6.1e-05
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    + C+dC+++F +ks L+ H+ t H
  KWMTBOMO14025 420 FSCKDCDRVFITKSRLRYHRHTvH 443
                    89******************9999 PP

  == domain 3  score: 19.2 bits;  conditional E-value: 1.9e-05
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    ++C+dC+k Fk++++L++H+ +H
  KWMTBOMO14025 458 FQCTDCPKQFKHRHSLEKHRASH 480
                    89******************999 PP

  == domain 4  score: 17.1 bits;  conditional E-value: 8.4e-05
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    ++CpdC+k+F + s+Lk H +tH
  KWMTBOMO14025 485 HECPDCPKKFGSVSQLKMHSKTH 507
                    78********************9 PP

  == domain 5  score: 21.1 bits;  conditional E-value: 4.6e-06
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    + C++Cgk F  ++nL++H rtH
  KWMTBOMO14025 516 FHCTYCGKGFYESYNLQVHERTH 538
                    78********************9 PP

  == domain 6  score: 17.0 bits;  conditional E-value: 9.3e-05
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    y+C++C+ +F ++s+LkrH+r+ H
  KWMTBOMO14025 544 YVCDICTSTFLTNSSLKRHLRVsH 567
                    9********************999 PP

  == domain 7  score: 8.5 bits;  conditional E-value: 0.048
                    EEETTTTEEES CS
        zf-C2H2   1 ykCpdCgksFk 11 
                    y+C++C+ksF 
  KWMTBOMO14025 573 YECKHCHKSFA 583
                    99********6 PP

  == domain 8  score: 7.9 bits;  conditional E-value: 0.073
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    + Cp C  ++++  +L++H  + H
  KWMTBOMO14025 604 FHCPQCQNKYTTFKDLQKHTYKaH 627
                    78*****************98888 PP