| Gene | Transcription Factor Family | Full Seq Evalue | Best Domain Evalue | Domain Number | Alignment Detail |
|---|---|---|---|---|---|
| KWMTBOMO14023 | zf-C2H2 | 5.3e-09 | 0.0047 | 7 | + View |
HMM length of domain: 23 aa
c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs.
i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified.
Domain annotation for each sequence:
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to
-- ----- ---- -------- -------- ------- ------ ------- ------
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 7.2 0.6 0.12 7.1 1 20 438 457
2 2.6 0.9 3.4 2e+02 3 23 474 494
3 9.3 0.5 0.026 1.5 1 23 500 522
4 17.2 3.4 7.9e-05 0.0047 1 23 528 550
5 12.2 0.6 0.003 0.18 1 23 556 578
6 12.1 5.0 0.0034 0.2 1 23 584 606
7 9.3 5.0 0.026 1.5 2 23 631 653
Alignments for each domain:
== domain 1 score: 7.2 bits; conditional E-value: 0.12
EEETTTTEEESSHHHHHHHH CS
zf-C2H2 1 ykCpdCgksFkrksnLkrHi 20
y+C +C+ F++k Lk+H
KWMTBOMO14023 438 YVCYKCNDIFPSKRGLKQHS 457
99*****************5 PP
== domain 2 score: 2.6 bits; conditional E-value: 3.4
ETTTTEEESSHHHHHHHHHCC CS
zf-C2H2 3 CpdCgksFkrksnLkrHirtH 23
C+ C++++ ++ Lk H r+H
KWMTBOMO14023 474 CTQCSYRCQSPAILKIHERVH 494
9******************99 PP
== domain 3 score: 9.3 bits; conditional E-value: 0.026
EEETTTTEEESSHHHHHHHHHCC CS
zf-C2H2 1 ykCpdCgksFkrksnLkrHirtH 23
+ C+ C+++ +k n +Hi +H
KWMTBOMO14023 500 FSCTFCDYKSGQKNNVAKHILVH 522
89*******************99 PP
== domain 4 score: 17.2 bits; conditional E-value: 7.9e-05
EEETTTTEEESSHHHHHHHHHCC CS
zf-C2H2 1 ykCpdCgksFkrksnLkrHirtH 23
++C +C++++ +k nL++H rtH
KWMTBOMO14023 528 FRCQYCNYRCAQKNNLVVHERTH 550
89********************9 PP
== domain 5 score: 12.2 bits; conditional E-value: 0.003
EEETTTTEEESSHHHHHHHHHCC CS
zf-C2H2 1 ykCpdCgksFkrksnLkrHirtH 23
+ C++C ++ +k nL++H+ H
KWMTBOMO14023 556 FACSYCAYRTVQKPNLVKHMYLH 578
78******************998 PP
== domain 6 score: 12.1 bits; conditional E-value: 0.0034
EEETTTTEEESSHHHHHHHHHCC CS
zf-C2H2 1 ykCpdCgksFkrksnLkrHirtH 23
+ C+ C++++ +k nL++H +H
KWMTBOMO14023 584 FSCDQCNYRCVQKTNLTKHKLRH 606
89******************999 PP
== domain 7 score: 9.3 bits; conditional E-value: 0.026
EETTTTEEESSHHHHHHHHHC.C CS
zf-C2H2 2 kCpdCgksFkrksnLkrHirt.H 23
kC+ C +++ +ks++++H++ H
KWMTBOMO14023 631 KCHMCAYRCVQKSSMEKHMKFeH 653
8******************9877 PP
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