HMM length of domain: 23 aa

c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs.
i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. 
Domain annotation for each sequence:
#	score	bias	c-Evalue	i-Evalue	hmmfrom	hmm to	alifrom	ali to
--	-----	----	--------	--------	-------	------	-------	------
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
1	7.3	0.2	0.11	6.5	5	23	350	368
2	10.0	0.0	0.016	0.93	3	23	376	396
3	1.4	0.2	8.5	5.1e+02	3	23	405	425
4	22.2	0.7	2.1e-06	0.00013	2	23	431	452
5	13.5	2.2	0.0012	0.071	1	23	458	480
6	18.0	0.4	4.6e-05	0.0027	1	19	484	502
7	13.9	0.2	0.00088	0.053	1	23	538	561
8	8.2	0.2	0.06	3.6	3	23	570	590
9	17.8	0.3	5.2e-05	0.0031	1	23	601	623
10	17.0	4.4	9.3e-05	0.0056	1	23	629	651
11	12.1	0.3	0.0033	0.2	3	23	659	679
12	17.7	0.7	5.7e-05	0.0034	1	23	685	708

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.11
                    TTTEEESSHHHHHHHHHCC CS
        zf-C2H2   5 dCgksFkrksnLkrHirtH 23 
                    dCg+ F +  ++++H+ +H
  KWMTBOMO11917 350 DCGEQFQDLTEYEKHQYKH 368
                    8***************999 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.016
                    ETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   3 CpdCgksFkrksnLkrHirtH 23 
                    C+ Cgk F +++ L+ H+  H
  KWMTBOMO11917 376 CNLCGKGFESPEILTGHMLLH 396
                    ******************999 PP

  == domain 3  score: 1.4 bits;  conditional E-value: 8.5
                    ETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   3 CpdCgksFkrksnLkrHirt.H 23 
                    Cp C++    +  L++Hi+  H
  KWMTBOMO11917 405 CPFCNQLI-KRTALTQHIKYgH 425
                    77777777.7889999999888 PP

  == domain 4  score: 22.2 bits;  conditional E-value: 2.1e-06
                    EETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHirtH 23 
                    +C++C k+F ++ nLkrH+++H
  KWMTBOMO11917 431 RCNICLKTFANPNNLKRHMMIH 452
                    7*******************99 PP

  == domain 5  score: 13.5 bits;  conditional E-value: 0.0012
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    ++C++C k+F++k  +++H+ tH
  KWMTBOMO11917 458 FECDICFKKFRQKITMQTHRLTH 480
                    89********************9 PP

  == domain 6  score: 18.0 bits;  conditional E-value: 4.6e-05
                    EEETTTTEEESSHHHHHHH CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrH 19 
                    ++C+ C+k+F++++ L++H
  KWMTBOMO11917 484 FTCSNCDKTFPTRDALNNH 502
                    89***************** PP

  == domain 7  score: 13.9 bits;  conditional E-value: 0.00088
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    y C+ C+k+F+  s L++H  + H
  KWMTBOMO11917 538 YACSLCKKMFSVESALEQHVEStH 561
                    88*****************98878 PP

  == domain 8  score: 8.2 bits;  conditional E-value: 0.06
                    ETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   3 CpdCgksFkrksnLkrHirtH 23 
                    C++Cg++ ++k +++ H  tH
  KWMTBOMO11917 570 CSECGEVLPSKKDMQMHSLTH 590
                    *****************9999 PP

  == domain 9  score: 17.8 bits;  conditional E-value: 5.2e-05
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    ++C++Cgk + ++ +L+ H r+H
  KWMTBOMO11917 601 FECSICGKGCASQAMLQMHERVH 623
                    89*******************99 PP

  == domain 10  score: 17.0 bits;  conditional E-value: 9.3e-05
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    ++C  C+ +Fk+k +L++H+ tH
  KWMTBOMO11917 629 FPCQLCSLRFKTKTHLRTHQLTH 651
                    89********************9 PP

  == domain 11  score: 12.1 bits;  conditional E-value: 0.0033
                    ETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   3 CpdCgksFkrksnLkrHirtH 23 
                    C++C k F  k nL++H+rtH
  KWMTBOMO11917 659 CSICMKFFALKGNLVVHLRTH 679
                    99******************9 PP

  == domain 12  score: 17.7 bits;  conditional E-value: 5.7e-05
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    y+C+ Cg+ F ++  Lk+H  + H
  KWMTBOMO11917 685 YVCSLCGEAFIDSKYLKKHKLKkH 708
                    99*****************99988 PP