Gene | Transcription Factor Family | Full Seq Evalue | Best Domain Evalue | Domain Number | Alignment Detail |
---|---|---|---|---|---|
KWMTBOMO11257 | MYB | 3.2e-15 | 4.6e-10 | 2 | + View |
HMM length of domain: 47 aa c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs. i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. Domain annotation for each sequence: # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to -- ----- ---- -------- -------- ------- ------ ------- ------ --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 14.3 0.0 3.3e-05 0.033 3 45 434 488 2 39.4 0.4 4.6e-13 4.6e-10 2 45 547 593 Alignments for each domain: == domain 1 score: 14.3 bits; conditional E-value: 3.3e-05 SS-HHHHHHHHHHHHHHTTT...THHHHHHHHS.........SS-HHHHHHHHHH CS MYB 3 kWteeEdelLleaveklGng...nWkkIakelg.........gRtakqcrsrwqn 45 Wt e + L++av++++ g +W+ +a+ l+ + +ak++ ++ ++ KWMTBOMO11257 434 EWTVEMTQMLIKAVNLFPAGtnqRWEVVANFLNqhctfiddkRLSAKEVLNKAKD 488 7********************************8888888888888888887665 PP == domain 2 score: 39.4 bits; conditional E-value: 4.6e-13 SSS-HHHHHHHHHHHHHHTTT...THHHHHHHHSSS-HHHHHHHHHH CS MYB 2 gkWteeEdelLleaveklGng...nWkkIakelggRtakqcrsrwqn 45 ++Wt+ E+elL++a++ ++ + +W+kI++ +++R++k+c r++ KWMTBOMO11257 547 KPWTKTEQELLEQAIKTFPVNtseRWEKISDCIPNRSKKDCMKRYKE 593 69*****************99************************86 PP |
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