HMM length of domain: 23 aa

c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs.
i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. 
Domain annotation for each sequence:
#	score	bias	c-Evalue	i-Evalue	hmmfrom	hmm to	alifrom	ali to
--	-----	----	--------	--------	-------	------	-------	------
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
1	13.6	1.2	0.0011	0.067	1	23	279	302
2	11.6	1.7	0.0047	0.28	1	19	318	336
3	16.4	3.4	0.00014	0.0084	2	23	346	367
4	22.0	0.8	2.4e-06	0.00014	1	23	371	394
5	9.3	2.0	0.025	1.5	1	23	397	419
6	15.0	0.1	0.0004	0.024	2	23	505	526
7	7.9	0.3	0.072	4.3	3	23	547	568
8	21.6	3.9	3.2e-06	0.00019	1	23	574	596
9	14.8	1.3	0.00046	0.028	1	23	601	623
10	11.7	4.8	0.0046	0.27	2	21	630	649
11	10.0	1.8	0.015	0.93	3	19	692	708

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 0.0011
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    y+C++C++ F + s +k+H+ + H
  KWMTBOMO10721 279 YQCDKCKQIFEQISTFKQHMVStH 302
                    9*******************8888 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 0.0047
                    EEETTTTEEESSHHHHHHH CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrH 19 
                    y C++Cgks k+++ ++ H
  KWMTBOMO10721 318 YMCTECGKSLKNQEKFELH 336
                    89***************99 PP

  == domain 3  score: 16.4 bits;  conditional E-value: 0.00014
                    EETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHirtH 23 
                    +C++C+k+F +k  L++H+++H
  KWMTBOMO10721 346 ECNKCHKVFASKFTLRTHRKIH 367
                    7*******************99 PP

  == domain 4  score: 22.0 bits;  conditional E-value: 2.4e-06
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    ++C++C++s+ ++++L++Hi++ H
  KWMTBOMO10721 371 HPCDYCTRSYATPEELRTHISKiH 394
                    68*******************999 PP

  == domain 5  score: 9.3 bits;  conditional E-value: 0.025
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    + C++C+ + ++ s++ +H+++H
  KWMTBOMO10721 397 FICDHCSFTANSYSDYINHQSSH 419
                    78*******************99 PP

  == domain 6  score: 15.0 bits;  conditional E-value: 0.0004
                    EETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHirtH 23 
                    +C++C ksF r  +LkrH+  H
  KWMTBOMO10721 505 VCEVCLKSFDRIGDLKRHLIEH 526
                    6******************998 PP

  == domain 7  score: 7.9 bits;  conditional E-value: 0.072
                    ETTTT.EEESSHHHHHHHHHCC CS
        zf-C2H2   3 CpdCg.ksFkrksnLkrHirtH 23 
                    C++C  ++F+r + +k+H+r H
  KWMTBOMO10721 547 CEVCQnETFTRVDRYKAHLREH 568
                    999*****************99 PP

  == domain 8  score: 21.6 bits;  conditional E-value: 3.2e-06
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    ykC+ C+ksF+++sn+ +H ++H
  KWMTBOMO10721 574 YKCTFCDKSFSDSSNFSKHKKIH 596
                    9********************99 PP

  == domain 9  score: 14.8 bits;  conditional E-value: 0.00046
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    ++C+ C ++F++k +  +H+  H
  KWMTBOMO10721 601 FQCDLCQRKFNSKKMIAQHMEYH 623
                    89******************988 PP

  == domain 10  score: 11.7 bits;  conditional E-value: 0.0046
                    EETTTTEEESSHHHHHHHHH CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHir 21 
                    +C++C++ F   s+L++Hi+
  KWMTBOMO10721 630 RCKYCNRIFHFESMLNKHIK 649
                    7*****************97 PP

  == domain 11  score: 10.0 bits;  conditional E-value: 0.015
                    ETTTTEEESSHHHHHHH CS
        zf-C2H2   3 CpdCgksFkrksnLkrH 19 
                    C +Cg++F+  s+LkrH
  KWMTBOMO10721 692 CLVCGMKFRKYSELKRH 708
                    99*************** PP