HMM length of domain: 198 aa

c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs.
i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. 
Domain annotation for each sequence:
#	score	bias	c-Evalue	i-Evalue	hmmfrom	hmm to	alifrom	ali to
--	-----	----	--------	--------	-------	------	-------	------
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
1	-0.0	0.0	0.17	5.9e+02	122	150	36	58
2	128.4	30.7	7.6e-41	2.6e-37	1	197	131	323

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 0.17
  TRAM_LAG1_CLN8 122 lkkkskssklvlfngllfllsFfvcRlvl 150
                       ++ ++    +f+ + ++++F+v+R +l
   KWMTBOMO09501  36 T-NY-TH----VFIPIPLAVVFMVIRNFL 58 
                     4.44.44....788999*********885 PP

  == domain 2  score: 128.4 bits;  conditional E-value: 7.6e-41
  TRAM_LAG1_CLN8   1 kfdervvslvqyllstvfglivlsssp......elwegyperilgathfllkayyllalgYfiydllvlllyekkrkdfvemliHhiitlvllvl 89 
                     kf+e+++++++yl+ ++fg++vl++++      +++ gyp++ +++    + +yy+++ +++++ l ++ +++ krkdf++m++Hhi+t++ll++
   KWMTBOMO09501 131 KFCENTWKFTFYLINFTFGIFVLWDKEwlwdidQCYIGYPHQGVTS---DVWWYYMISSAFYWS-LTISQFWDVKRKDFWQMFVHHIATIALLSF 221
                     799************************7777777777779888888...999**********88.9999999*********************** PP

  TRAM_LAG1_CLN8  90 syvrnlgrvglvvlllhelsdpflnlrkilsylkkkskssklvlfngllfllsFfvcRlvllpylillsildvaklslstaplwlpliflilllv 184
                     s+v nl+r+g+++ll+h+  d+f++  k  +y+ ++ + +++ lf  l+++++++++R+ ++p++i++s+   a+  +   +++ ++if+ ll++
   KWMTBOMO09501 222 SWVCNLHRIGTLMLLVHDCADIFVESVKAAKYA-GY-QRLCDTLF--LVLIVVWISTRVGIYPFYIIWSTSIRAP--MLLPMFPAYYIFNSLLCL 310
                     *********************************.88.788*****..************************8887..66678************* PP

  TRAM_LAG1_CLN8 185 LqllnlyWfyliv 197
                     L++l++ W++li+
   KWMTBOMO09501 311 LLCLHILWTWLIL 323
                     ***********97 PP