HMM length of domain: 23 aa

c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs.
i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. 
Domain annotation for each sequence:
#	score	bias	c-Evalue	i-Evalue	hmmfrom	hmm to	alifrom	ali to
--	-----	----	--------	--------	-------	------	-------	------
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
1	3.8	0.6	1.4	86	1	23	222	244
2	8.0	7.3	0.068	4	3	23	253	273
3	17.2	4.2	8e-05	0.0048	1	23	279	301
4	10.6	5.8	0.01	0.61	1	23	307	331
5	6.8	0.8	0.16	9.5	1	21	568	588
6	5.7	0.1	0.35	21	1	21	596	616

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 1.4
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    +kC+ C  +  +k ++  H + H
  KWMTBOMO09238 222 FKCKQCEFVAVTKLSFWEHSKEH 244
                    8********99999999998887 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.068
                    ETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   3 CpdCgksFkrksnLkrHirtH 23 
                    C +C+ +   k++L+ H+r H
  KWMTBOMO09238 253 CRKCPFVTEYKHHLEYHMRNH 273
                    99*****************99 PP

  == domain 3  score: 17.2 bits;  conditional E-value: 8e-05
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    ++C+ C++s+ +ks+L++H+++H
  KWMTBOMO09238 279 FQCSQCSYSCVNKSMLNSHLKSH 301
                    89*******************99 PP

  == domain 4  score: 10.6 bits;  conditional E-value: 0.01
                    EEETTTTEEESSHHHHHHHHHC..C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt..H 23 
                    y+C dC++  k  ++Lk H+r+  H
  KWMTBOMO09238 307 YRCADCNYATKYCHSLKLHLRKyqH 331
                    9********************8666 PP

  == domain 5  score: 6.8 bits;  conditional E-value: 0.16
                    EEETTTTEEESSHHHHHHHHH CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHir 21 
                    y C +C+ +F +  + + H+ 
  KWMTBOMO09238 568 YACQYCDITFGDLTMHTIHMG 588
                    88********99999888885 PP

  == domain 6  score: 5.7 bits;  conditional E-value: 0.35
                    EEETTTTEEESSHHHHHHHHH CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHir 21 
                    + C++Cg++  ++  +  H+ 
  KWMTBOMO09238 596 FMCNKCGERSADRVAFFIHLG 616
                    78**********999999985 PP