Gene | Transcription Factor Family | Full Seq Evalue | Best Domain Evalue | Domain Number | Alignment Detail |
---|---|---|---|---|---|
KWMTBOMO09116 | E2F | 5.3e-34 | 6.8e-17 | 2 | + View |
HMM length of domain: 71 aa c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs. i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. Domain annotation for each sequence: # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to -- ----- ---- -------- -------- ------- ------ ------- ------ --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 61.2 0.1 1.6e-20 6.8e-17 1 71 53 119 2 53.8 0.3 3.1e-18 1.3e-14 2 71 155 245 Alignments for each domain: == domain 1 score: 61.2 bits; conditional E-value: 1.6e-20 E2F 1 kdksLgvlskkfvellkesakgt..ltlnevakeLvekkdekvkkRRiYDilNVLealglieKeskneikWig 71 k+ksL++l+ +f++l+ + +gt ++l+ a +L+ v+kRRiYDi+N+Lea++ ++kn++ W+g KWMTBOMO09116 53 KEKSLQILCDRFLQLYPLKGNGTveIQLDSTAARLG------VEKRRIYDIINILEAMQCAVHKRKNTYLWHG 119 69**************9977777789**********......*****************987777******98 PP == domain 2 score: 53.8 bits; conditional E-value: 3.1e-18 E2F 2 dksLgvlskkfvellke.sakgtltlnevakeLv..............ekkdekvkkRRiYDilNVLealglieKes......kneikWig 71 +k+Lgvl+++f++l+ ++ ++l+ +++ L+ +++++k k RR+YDi+NVL ++glieK+s k+ +k++g KWMTBOMO09116 155 HKTLGVLAQRFLMLFLVePLNTLINLEMAVRVLIdtsnknktnlsleqQDRQHKSKVRRLYDIANVLISIGLIEKVSgnlilkKPVFKYVG 245 699************55145666************************99999************************988888777777765 PP |
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