HMM length of domain: 1227 aa

c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs.
i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. 
Domain annotation for each sequence:
#	score	bias	c-Evalue	i-Evalue	hmmfrom	hmm to	alifrom	ali to
--	-----	----	--------	--------	-------	------	-------	------
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
1	14.8	27.9	3.2e-07	0.0054	471	631	97	245
2	141.2	2.0	2.3e-45	3.8e-41	836	1224	331	765

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 3.2e-07
           AF-4 471 eSeSsSeSeSSSeSDSesEssssdseanepprtatp.e.pepps.tnkWqLdnwlnkvnqlassqeessaessseteesespkkeskeqsegksks 563
                    +S+S   S SSS SDSesEsss++s++  ++ t++  e p +p+ ++ W L n+     ++a++ ++   e+  e ++      ++k++ +   + 
  KWMTBOMO08403  97 GSNS-PTSGSSSPSDSESESSSTESSVLAAATTPATsElPAAPAqSDSWSLVNFAP---PPAQPPDNNY-ETGKELRHALAD-VKGKSPIS---EM 183
                    4444.689*****************99988866654269999995669******88...7777777644.222333332222.22222212...11 PP

           AF-4 564 sssevveesseskpkakskaeqkkseekqdkrskqkspaqkeseepntrktvgkkqPkksekasveee 631
                    s se    +s++ p a  +a + +++  +  +s  ++p +++ ++p + +  g ++  ++ k+  ++e
  KWMTBOMO08403 184 SDSE----TSSPSPGAGRRARSHTNNRMSAASSDDDTPHHSS-TSP-RVTASGPQKRGRPPKTRGSDE 245
                    1111....2333333322222222222233344444443211.111.111222222222222222222 PP

  == domain 2  score: 141.2 bits;  conditional E-value: 2.3e-45
           AF-4  836 kklrleketksllsppvissshkesskkksskkkseekkkekllppllsplsseskskkpak..krsssessslsqessksaketkssskksss 927 
                      k + + +    + p++   +++  ++++s +++++e  ++  +p  ++pl +   ++ p+    r  ++++ ++ +++      ++ ++ + +
  KWMTBOMO08403  331 SKAKPQVTIIEATAPECCADDEERRRRERSCERRHDEALARVSPPRVVEPLARVRDERSPKTsiERLAESKTAIEIKPE-----PERVTEREVK 419 
                     3444444444445555555555555555566666666666666666666666655555444433333333333333333.....2222222233 PP

           AF-4  928 sskhkksegkasesskenkkssk.................................................................seaklf 956 
                      + h+ ++ ++ e+    k ++                                                                  +e + +
  KWMTBOMO08403  420 REVHREVQVERVERYV--KAEADvgsglkrpseelcsnvaerrrsryvvriplsrlrmevvralnrpqppvkrlltphveqggevannHERSST 511 
                     3344444444444433..22222334566666688888999999999999*****************************999999875355555 PP

           AF-4  957 pvpslpngkskprr.pklkfedrqhsadyylkEAKkLKhkADalsdKlgKAvkYlDAalsFiEcGiAmEkdpqeakSaYtmyseTVeLikfvlk 1049
                     +++++p   s  +r p   ++d+ +  +yyl EAK+L+  A+a+ d l++ + Yl+ +l F+  G  +E ++   k a+t+y eT+e ik + +
  KWMTBOMO08403  512 APEQTPIYFSYFERlPADALSDEEKDHKYYLVEAKRLRSAAEAEQDPLSRVMLYLESVLCFVLTGRVLELES-DTKGAFTIYRETIEYIKSIHS 604 
                     55556666555555267778999999*******************************************998.679****************** PP

           AF-4 1050 LKnfvdasatsaekklavLClrCqSLLylamFrlKkdtAlKYSrtLtehfknsskstqapspcvangkkstgtPSPlspspSPassvssssgss 1143
                     + +   as      kl +L lr q+LLyl+mF++       Y r  +e+ k   +  q+p   +a      +  SPlspspSPa+sv+s  gs+
  KWMTBOMO08403  605 MPQRFRASPHDTFNKLDILSLRVQALLYLRMFKM-------YNREVKEYNKIVHEYQQKP--ALA------ESVSPLSPSPSPAGSVGSV-GSA 682 
                     ***9999999999********************8.......7777888888777778888..444......568**************96.666 PP

           AF-4 1144 ssssvsssVsiPqrIhqmaaSyVnITsniLrayeiWeqAeeLar..knkeffaeLdtvmgpLalnSsmteLVrYtRQGlhwLr 1224
                     ss+  s   s+P + hq      +  + +  a+++WeqA+ L+r   n+++f   d+  gpL+l+S+  +LV+Y+R ++  L+
  KWMTBOMO08403  683 SSGYCSLAHSVPAHAHQALLLLTKYYAFLYVAHDLWEQADGLCRlrANQDLFIAVDRKCGPLSLSSTFRHLVQYVRYAISLLK 765 
                     6667788889*****9977766666666777***********964489****************************9999887 PP