HMM length of domain: 23 aa

c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs.
i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. 
Domain annotation for each sequence:
#	score	bias	c-Evalue	i-Evalue	hmmfrom	hmm to	alifrom	ali to
--	-----	----	--------	--------	-------	------	-------	------
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
1	29.9	1.0	7.3e-09	4.4e-07	1	23	31	53
2	27.1	1.4	5.6e-08	3.4e-06	1	23	60	82
3	30.9	1.7	3.6e-09	2.2e-07	1	23	88	110
4	27.1	1.4	5.6e-08	3.4e-06	1	23	117	139
5	27.1	0.9	5.7e-08	3.4e-06	1	23	145	167
6	23.8	0.5	6.3e-07	3.8e-05	3	23	175	195
7	27.2	2.1	5.5e-08	3.3e-06	1	23	201	223
8	25.3	1.4	2.2e-07	1.3e-05	1	23	229	251
9	25.3	1.3	2.2e-07	1.3e-05	1	23	258	280
10	12.1	0.1	0.0033	0.2	5	23	290	308

  Alignments for each domain:
  == domain 1  score: 29.9 bits;  conditional E-value: 7.3e-09
                   EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2  1 ykCpdCgksFkrksnLkrHirtH 23
                   y C++C+ksF+ ks+L+rH+r+H
  KWMTBOMO06127 31 YSCDVCDKSFTYKSDLERHLRIH 53
                   89********************9 PP

  == domain 2  score: 27.1 bits;  conditional E-value: 5.6e-08
                   EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2  1 ykCpdCgksFkrksnLkrHirtH 23
                   y C++C+ksF+++ +Lk H+r+H
  KWMTBOMO06127 60 YSCDVCDKSFTQNGHLKEHLRIH 82
                   89********************9 PP

  == domain 3  score: 30.9 bits;  conditional E-value: 3.6e-09
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y C++C+ksF+rksn++rH+r+H
  KWMTBOMO06127  88 YSCEVCDKSFTRKSNFERHLRIH 110
                    89********************9 PP

  == domain 4  score: 27.1 bits;  conditional E-value: 5.6e-08
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y C++C+ksF+++ +Lk H+r+H
  KWMTBOMO06127 117 YSCDVCDKSFTQNGHLKEHLRIH 139
                    89********************9 PP

  == domain 5  score: 27.1 bits;  conditional E-value: 5.7e-08
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y C++C+ksF+rk +L+ H+r+H
  KWMTBOMO06127 145 YSCDVCDKSFTRKTSLNIHLRIH 167
                    89********************9 PP

  == domain 6  score: 23.8 bits;  conditional E-value: 6.3e-07
                    ETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   3 CpdCgksFkrksnLkrHirtH 23 
                    C++C+ksF++k  Lk H+r+H
  KWMTBOMO06127 175 CEVCDKSFTQKGYLKEHLRIH 195
                    ********************9 PP

  == domain 7  score: 27.2 bits;  conditional E-value: 5.5e-08
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y C++C+ksF++ksnLk H+r+H
  KWMTBOMO06127 201 YSCEVCDKSFTHKSNLKGHLRIH 223
                    89********************9 PP

  == domain 8  score: 25.3 bits;  conditional E-value: 2.2e-07
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y+C++C+ksF++k +L+ H+r+H
  KWMTBOMO06127 229 YTCEVCDKSFTHKISLNIHLRIH 251
                    9*********************9 PP

  == domain 9  score: 25.3 bits;  conditional E-value: 2.2e-07
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y C++C+ksF++k  LkrH ++H
  KWMTBOMO06127 258 YSCEVCDKSFTQKNTLKRHVKIH 280
                    89*******************99 PP

  == domain 10  score: 12.1 bits;  conditional E-value: 0.0033
                    TTTEEESSHHHHHHHHHCC CS
        zf-C2H2   5 dCgksFkrksnLkrHirtH 23 
                    +C+ksF+rk  Lk+H+ tH
  KWMTBOMO06127 290 VCDKSFTRKGILKNHLGTH 308
                    6***************999 PP