HMM length of domain: 23 aa

c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs.
i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. 
Domain annotation for each sequence:
#	score	bias	c-Evalue	i-Evalue	hmmfrom	hmm to	alifrom	ali to
--	-----	----	--------	--------	-------	------	-------	------
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
1	13.4	4.0	0.0013	0.078	1	21	652	672
2	19.4	1.8	1.6e-05	0.00094	1	23	680	702
3	12.1	5.8	0.0032	0.19	1	21	708	728
4	4.4	1.8	0.95	57	1	23	747	770

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 0.0013
                    EEETTTTEEESSHHHHHHHHH CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHir 21 
                    ++C +C+k F+ + +L+rH++
  KWMTBOMO07945 652 FVCRVCSKNFSLQRLLNRHMK 672
                    89******************7 PP

  == domain 2  score: 19.4 bits;  conditional E-value: 1.6e-05
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y C+ Cgk F++  +LkrH rtH
  KWMTBOMO07945 680 YLCTFCGKGFNDTFDLKRHTRTH 702
                    66********************9 PP

  == domain 3  score: 12.1 bits;  conditional E-value: 0.0032
                    EEETTTTEEESSHHHHHHHHH CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHir 21 
                    ykC+ C ksF+++ +L++H  
  KWMTBOMO07945 708 YKCNLCEKSFTQRCSLESHCL 728
                    9******************55 PP

  == domain 4  score: 4.4 bits;  conditional E-value: 0.95
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    y+C++Cg + + +++   H+++ H
  KWMTBOMO07945 747 YVCEECGHTTSEPEEHYMHLKKqH 770
                    9*********99999888888877 PP