HMM length of domain: 103 aa

c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs.
i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. 
Domain annotation for each sequence:
#	score	bias	c-Evalue	i-Evalue	hmmfrom	hmm to	alifrom	ali to
--	-----	----	--------	--------	-------	------	-------	------
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
1	135.9	1.0	1.4e-43	4.6e-40	2	103	4364	4464

  Alignments for each domain:
  == domain 1  score: 135.9 bits;  conditional E-value: 1.4e-43
            MH1    2 ekavesllkklkkkkeqleellkavesrgkkktkCvliprsldgrlqvaqrkglphvilcrlfrwpdLqsakelkaletceaaeklkkdevCvn 95  
                     ekav+sl+kklkk+k+++eel++a+++   +++kCv+iprsldgrlqv++rkglphvi+cr++rwpdLqs++elk le c++ +++k++evC+n
  KWMTBOMO06993 4364 EKAVDSLVKKLKKRKGAVEELERALSCP-GTPSKCVTIPRSLDGRLQVSHRKGLPHVIYCRVWRWPDLQSHHELKPLEICQFPFSAKQKEVCIN 4456
                     89***********************988.7788************************************************************* PP

            MH1   96 PyHysrve 103 
                     PyHy+rve
  KWMTBOMO06993 4457 PYHYKRVE 4464
                     ******96 PP