HMM length of domain: 23 aa

c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs.
i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. 
Domain annotation for each sequence:
#	score	bias	c-Evalue	i-Evalue	hmmfrom	hmm to	alifrom	ali to
--	-----	----	--------	--------	-------	------	-------	------
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
1	8.8	0.7	0.036	2.2	1	23	34	56
2	18.5	2.4	3e-05	0.0018	2	23	62	83
3	19.6	8.1	1.4e-05	0.00083	1	23	92	114
4	16.0	1.1	0.00019	0.012	1	21	120	140
5	11.0	0.5	0.0076	0.46	2	23	401	422
6	19.9	1.0	1.1e-05	0.00068	1	23	713	735
7	15.0	9.6	0.00039	0.024	1	23	741	763
8	6.9	7.8	0.15	9.2	1	21	769	789

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.036
                   EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2  1 ykCpdCgksFkrksnLkrHirtH 23
                   ++C+ C  +++++++L rH   H
  KWMTBOMO05383 34 FTCSQCRGTYPTREQLDRHETLH 56
                   89*****************8887 PP

  == domain 2  score: 18.5 bits;  conditional E-value: 3e-05
                   EETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2  2 kCpdCgksFkrksnLkrHirtH 23
                   +C++C+ksF + + L+rH+ +H
  KWMTBOMO05383 62 TCKICHKSFANVYRLQRHMISH 83
                   7*******************99 PP

  == domain 3  score: 19.6 bits;  conditional E-value: 1.4e-05
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    ykC+dC+k Fk k++Lk H r+H
  KWMTBOMO05383  92 YKCNDCDKAFKFKHHLKEHHRIH 114
                    9********************99 PP

  == domain 4  score: 16.0 bits;  conditional E-value: 0.00019
                    EEETTTTEEESSHHHHHHHHH CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHir 21 
                    ++C  Cgk+F+++ ++ +H+ 
  KWMTBOMO05383 120 FECANCGKKFSHSGSYSSHMT 140
                    89*****************95 PP

  == domain 5  score: 11.0 bits;  conditional E-value: 0.0076
                    EETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHirtH 23 
                    +C +C+ +F ++++L  H ++H
  KWMTBOMO05383 401 RCFKCNITFESRDELLDHEKIH 422
                    7******************999 PP

  == domain 6  score: 19.9 bits;  conditional E-value: 1.1e-05
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    ++C+ C+k+F  +s+L rH   H
  KWMTBOMO05383 713 FVCDQCDKTFVKQSSLARHKYEH 735
                    89*****************8877 PP

  == domain 7  score: 15.0 bits;  conditional E-value: 0.00039
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    +kC +C+k Fk+k++L+ H r H
  KWMTBOMO05383 741 HKCQECPKAFKHKHHLTEHKRLH 763
                    79*******************99 PP

  == domain 8  score: 6.9 bits;  conditional E-value: 0.15
                    EEETTTTEEESSHHHHHHHHH CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHir 21 
                    ++C +C k+F+++ ++ +H++
  KWMTBOMO05383 769 FQCCKCFKKFSHSGSYSQHMN 789
                    89******************7 PP