HMM length of domain: 23 aa

c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs.
i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. 
Domain annotation for each sequence:
#	score	bias	c-Evalue	i-Evalue	hmmfrom	hmm to	alifrom	ali to
--	-----	----	--------	--------	-------	------	-------	------
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
1	18.6	0.4	2.9e-05	0.0017	1	23	44	67
2	15.5	1.0	0.00027	0.016	1	23	73	95
3	9.1	1.9	0.03	1.8	1	23	101	123
4	11.4	2.4	0.0054	0.32	2	23	130	152
5	6.7	0.2	0.17	10	3	21	163	181
6	1.2	1.5	9.4	5.7e+02	2	14	185	197
7	8.6	0.4	0.042	2.5	1	23	218	240

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 2.9e-05
                   EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2  1 ykCpdCgksFkrksnLkrHirt.H 23
                   +kC++C+++  + + L +Hir+ H
  KWMTBOMO06256 44 FKCNECNRTVDSEEKLSQHIRRaH 67
                   8*********************99 PP

  == domain 2  score: 15.5 bits;  conditional E-value: 0.00027
                   EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2  1 ykCpdCgksFkrksnLkrHirtH 23
                   ++C+ C +s  +ks ++ H r+H
  KWMTBOMO06256 73 FQCSMCQYSTYNKSGFEEHVRIH 95
                   89*******************99 PP

  == domain 3  score: 9.1 bits;  conditional E-value: 0.03
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    +kC++C+++  +k   k+H  +H
  KWMTBOMO06256 101 FKCSYCPYRSVSKKYAKKHELIH 123
                    8********99*******99888 PP

  == domain 4  score: 11.4 bits;  conditional E-value: 0.0054
                    EETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHirt.H 23 
                    +C +C++  ++  +L++H+++ H
  KWMTBOMO06256 130 RCQHCPYIARNYRMLNSHQKKlH 152
                    8*******************999 PP

  == domain 5  score: 6.7 bits;  conditional E-value: 0.17
                    ETTTTEEESSHHHHHHHHH CS
        zf-C2H2   3 CpdCgksFkrksnLkrHir 21 
                    C+ Cgk+F +   + +H +
  KWMTBOMO06256 163 CTLCGKKFDDMNVYFAHKK 181
                    ********98877777765 PP

  == domain 6  score: 1.2 bits;  conditional E-value: 9.4
                    EETTTTEEESSHH CS
        zf-C2H2   2 kCpdCgksFkrks 14 
                    +C++Cg   +++ 
  KWMTBOMO06256 185 QCDECGLEVCHQA 197
                    79***96555554 PP

  == domain 7  score: 8.6 bits;  conditional E-value: 0.042
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    ++C++C +s  +k     Hi  H
  KWMTBOMO06256 218 FTCKICEWSSVNKVKVLLHIIHH 240
                    89*****************9988 PP