HMM length of domain: 23 aa

c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs.
i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. 
Domain annotation for each sequence:
#	score	bias	c-Evalue	i-Evalue	hmmfrom	hmm to	alifrom	ali to
--	-----	----	--------	--------	-------	------	-------	------
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
1	4.9	0.2	0.64	38	2	20	1431	1449
2	17.8	0.5	5.2e-05	0.0031	2	23	1565	1586
3	13.2	3.5	0.0015	0.09	1	23	1604	1626
4	11.2	4.3	0.0064	0.39	1	23	1664	1686
5	10.2	4.8	0.013	0.79	2	23	1713	1734
6	11.4	0.4	0.0054	0.32	1	20	1758	1777
7	5.0	0.8	0.6	36	5	23	2128	2147

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.64
                     EETTTTEEESSHHHHHHHH CS
        zf-C2H2    2 kCpdCgksFkrksnLkrHi 20  
                     +Cp+C+k F++     +H 
  KWMTBOMO04910 1431 VCPICNKLFRTENVVFKHV 1449
                     7********9988777776 PP

  == domain 2  score: 17.8 bits;  conditional E-value: 5.2e-05
                     EETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2    2 kCpdCgksFkrksnLkrHirtH 23  
                     +C++Cgk+F++ s L +H+  H
  KWMTBOMO04910 1565 VCEYCGKTFRQLSYLDSHRLQH 1586
                     7*****************9988 PP

  == domain 3  score: 13.2 bits;  conditional E-value: 0.0015
                     EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2    1 ykCpdCgksFkrksnLkrHirtH 23  
                     + C++C+k F+  ++L++H+ +H
  KWMTBOMO04910 1604 FSCEICKKEFRKLHHLVQHRIIH 1626
                     89******************998 PP

  == domain 4  score: 11.2 bits;  conditional E-value: 0.0064
                     EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2    1 ykCpdCgksFkrksnLkrHirtH 23  
                     ++C+ C+ksF+  ++L+ H+ tH
  KWMTBOMO04910 1664 FRCEPCDKSFRKLHHLVEHRETH 1686
                     89*******************99 PP

  == domain 5  score: 10.2 bits;  conditional E-value: 0.013
                     EETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2    2 kCpdCgksFkrksnLkrHirtH 23  
                     +C++C+k+F+  ++L+ H   H
  KWMTBOMO04910 1713 QCEICKKTFRKLHHLMEHKEQH 1734
                     7*****************9877 PP

  == domain 6  score: 11.4 bits;  conditional E-value: 0.0054
                     EEETTTTEEESSHHHHHHHH CS
        zf-C2H2    1 ykCpdCgksFkrksnLkrHi 20  
                     ++Cp C ++F++ ++L++H 
  KWMTBOMO04910 1758 HECPLCYMVFPNEHSLNKHT 1777
                     78*****************6 PP

  == domain 7  score: 5.0 bits;  conditional E-value: 0.6
                     TTTEEESSHHHHHHHHHC.C CS
        zf-C2H2    5 dCgksFkrksnLkrHirt.H 23  
                     dCg+ F++  +L rH    H
  KWMTBOMO04910 2128 DCGQLFSSAALLSRHTTLaH 2147
                     8**************98877 PP