HMM length of domain: 23 aa

c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs.
i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. 
Domain annotation for each sequence:
#	score	bias	c-Evalue	i-Evalue	hmmfrom	hmm to	alifrom	ali to
--	-----	----	--------	--------	-------	------	-------	------
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
1	14.8	0.4	0.00046	0.028	2	23	131	152
2	12.2	2.5	0.003	0.18	1	23	158	180
3	18.1	0.3	4.1e-05	0.0024	1	23	280	302
4	3.6	0.8	1.7	1e+02	2	23	309	331
5	15.9	0.0	0.0002	0.012	3	23	387	408
6	8.4	0.1	0.051	3.1	1	23	422	444
7	19.1	0.2	1.9e-05	0.0012	1	23	477	499
8	12.5	0.1	0.0025	0.15	1	23	505	527
9	14.2	0.4	0.00074	0.044	1	23	533	555
10	11.2	0.2	0.0064	0.39	1	23	569	591
11	11.3	0.1	0.0061	0.37	1	20	715	734

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 0.00046
                    EETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHirtH 23 
                    +C+ C+++F+ k  L++H+  H
  KWMTBOMO04507 131 PCDFCSRRFRKKAALMNHMVAH 152
                    6******************877 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 0.003
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    + C+ Cg ++ rk +L++H+++H
  KWMTBOMO04507 158 HACNLCGVRYVRKCDLMNHLKVH 180
                    56*******************99 PP

  == domain 3  score: 18.1 bits;  conditional E-value: 4.1e-05
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    ++C +Cg  F r   L++H r+H
  KWMTBOMO04507 280 FVCRHCGIGFAREKALQSHARVH 302
                    89*******************99 PP

  == domain 4  score: 3.6 bits;  conditional E-value: 1.7
                    EETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHirt.H 23 
                    +C++Cg+ + +++ L +H r  H
  KWMTBOMO04507 309 ECGECGELCWSREALASHTRHrH 331
                    6******999*********9988 PP

  == domain 5  score: 15.9 bits;  conditional E-value: 0.0002
                    ETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   3 CpdCgksFkrksnLkrHirt.H 23 
                    CpdCg  F r ++L+rH    H
  KWMTBOMO04507 387 CPDCGVAFQRADLLRRHVAAaH 408
                    *****************87666 PP

  == domain 6  score: 8.4 bits;  conditional E-value: 0.051
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    ++C++Cg  +++  +L +H   H
  KWMTBOMO04507 422 HTCEVCGAACTDALQLLAHAELH 444
                    79*****************9888 PP

  == domain 7  score: 19.1 bits;  conditional E-value: 1.9e-05
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    ++C +Cgk+F ++s+ + Hir+H
  KWMTBOMO04507 477 FPCRECGKVFGSRSSQQIHIRIH 499
                    89********************9 PP

  == domain 8  score: 12.5 bits;  conditional E-value: 0.0025
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y C  C k F +   L++H r+H
  KWMTBOMO04507 505 YACRFCWKAFADGGTLRKHERIH 527
                    88*******************99 PP

  == domain 9  score: 14.2 bits;  conditional E-value: 0.00074
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y C +C++ F+++  L+ H r+H
  KWMTBOMO04507 533 YACAVCPRAFNQRVVLREHVRSH 555
                    88********************6 PP

  == domain 10  score: 11.2 bits;  conditional E-value: 0.0064
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y C +Cg++  ++ +L++H+  H
  KWMTBOMO04507 569 YICVVCGRTLHSSNELVQHLIQH 591
                    89*****************9988 PP

  == domain 11  score: 11.3 bits;  conditional E-value: 0.0061
                    EEETTTTEEESSHHHHHHHH CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHi 20 
                    +kC+ C+  F r+++L  H 
  KWMTBOMO04507 715 FKCEMCSLEFARRDDLLLHV 734
                    8****************995 PP