HMM length of domain: 23 aa

c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs.
i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. 
Domain annotation for each sequence:
#	score	bias	c-Evalue	i-Evalue	hmmfrom	hmm to	alifrom	ali to
--	-----	----	--------	--------	-------	------	-------	------
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
1	1.9	0.6	5.8	3.5e+02	1	23	475	498
2	12.5	0.3	0.0026	0.15	1	23	505	527
3	6.7	0.6	0.18	11	1	23	531	554
4	2.5	4.4	3.8	2.3e+02	2	23	562	583
5	18.8	2.4	2.4e-05	0.0015	1	23	587	610
6	16.5	0.5	0.00013	0.0079	1	20	618	637
7	16.5	1.0	0.00014	0.0081	1	23	646	669
8	22.4	3.1	1.8e-06	0.00011	3	23	678	698
9	21.4	1.8	3.7e-06	0.00022	1	23	704	727

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 5.8
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    ykC+ C   F  +  +++H+++ H
  KWMTBOMO06203 475 YKCETCILGFQYRRPYEAHLNSrH 498
                    9*****999999999999999888 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 0.0026
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y+Cp+C+ +  + +++++H+r+H
  KWMTBOMO06203 505 YVCPICKTVVMSVDSFTAHYRRH 527
                    9*********************9 PP

  == domain 3  score: 6.7 bits;  conditional E-value: 0.18
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    ++C+ C k+  ++   k+H+ t H
  KWMTBOMO06203 531 FQCNLCEKRTIDRGRIKQHLYTeH 554
                    89*****************99988 PP

  == domain 4  score: 2.5 bits;  conditional E-value: 3.8
                    EETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHirtH 23 
                    kC+ Cg + ++ +n  +H+ tH
  KWMTBOMO06203 562 KCKQCGHVSRSLDNHIHHLDTH 583
                    8******************999 PP

  == domain 5  score: 18.8 bits;  conditional E-value: 2.4e-05
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    +kC++C+k+Fk++  Lk+H    H
  KWMTBOMO06203 587 FKCKECTKTFKHRGGLKNHAILkH 610
                    8******************98777 PP

  == domain 6  score: 16.5 bits;  conditional E-value: 0.00013
                    EEETTTTEEESSHHHHHHHH CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHi 20 
                    y+C++C+++F +k  L+ Hi
  KWMTBOMO06203 618 YVCDHCNRRFIDKTKLRDHI 637
                    9******************8 PP

  == domain 7  score: 16.5 bits;  conditional E-value: 0.00014
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    y+C++C k+ k++ nL +Hir  H
  KWMTBOMO06203 646 YQCHICLKPSKNRVNLDQHIRNvH 669
                    9********************999 PP

  == domain 8  score: 22.4 bits;  conditional E-value: 1.8e-06
                    ETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   3 CpdCgksFkrksnLkrHirtH 23 
                    C++Cgk F++k +L +H+rtH
  KWMTBOMO06203 678 CHHCGKGFPTKVQLDSHMRTH 698
                    ********************9 PP

  == domain 9  score: 21.4 bits;  conditional E-value: 3.7e-06
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    + C++C+ +F++ksnL +H++  H
  KWMTBOMO06203 704 FICEYCPTTFTQKSNLYKHYKQvH 727
                    78******************9888 PP