HMM length of domain: 44 aa

c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs.
i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. 
Domain annotation for each sequence:
#	score	bias	c-Evalue	i-Evalue	hmmfrom	hmm to	alifrom	ali to
--	-----	----	--------	--------	-------	------	-------	------
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
1	34.6	1.6	1.6e-11	1.4e-08	3	44	88	128
2	26.4	2.9	5.8e-09	4.9e-06	3	44	204	244
3	23.6	5.9	4.3e-08	3.6e-05	3	44	262	302
4	15.6	0.1	1.4e-05	0.012	7	43	323	361

  Alignments for each domain:
  == domain 1  score: 34.6 bits;  conditional E-value: 1.6e-11
                    TTSSS----GGSS--EETTTTEE----.SSTHHHHHHHHHS-H CS
         zf-BED   3 vWkyftpvslkeqkavCryCgkilsrg.ggttnLkrHLrrkHp 44 
                    +Wkyf ++   + k +C++C+ +ls + ++ttnLkrH r++Hp
  KWMTBOMO03283  88 IWKYFEKLG--NIKYRCNICKVVLSVKgTSTTNLKRHVRTRHP 128
                    8********..**************999**************8 PP

  == domain 2  score: 26.4 bits;  conditional E-value: 5.8e-09
                    TTSSS----GGSS--EETTTTEE----.SSTHHHHHHHHHS-H CS
         zf-BED   3 vWkyftpvslkeqkavCryCgkilsrg.ggttnLkrHLrrkHp 44 
                    vW+yf++vs   + a+C+ Cg+ ++ g  ++ nL rHL+  H+
  KWMTBOMO03283 204 VWSYFKIVS--PTHARCKLCGRLINHGrYSSGNLNRHLNVVHK 244
                    9********..****************99*********98885 PP

  == domain 3  score: 23.6 bits;  conditional E-value: 4.3e-08
                    TTSSS----GGSS--EETTTTEE----.SSTHHHHHHHHHS-H CS
         zf-BED   3 vWkyftpvslkeqkavCryCgkilsrg.ggttnLkrHLrrkHp 44 
                    +W+yf++v+  +  a+C+ C + +s   + + n+ rHLrr H+
  KWMTBOMO03283 262 IWCYFSRVT--SSQAQCKLCSRHISHAgNASGNMNRHLRRIHN 302
                    8********..**************9978899********995 PP

  == domain 4  score: 15.6 bits;  conditional E-value: 1.4e-05
                    S----GGSS--EETTTTEE----....SSTHHHHHHHHHS- CS
         zf-BED   7 ftpvslkeqkavCryCgkilsrg....ggttnLkrHLrrkH 43 
                     ++++  ++   C++C++ + +g    ++ t + +HL+  H
  KWMTBOMO03283 323 IDRCD--DGGYSCKICEFRSENGseeiSNLTSMLAHLKAEH 361
                    55566..78889*************************9998 PP