Silkworm Genome Informatics Database

Found: 1 items

Gene	Transcription Factor Family	Full Seq Evalue	Best Domain Evalue	Domain Number	Alignment Detail
KWMTBOMO01671	RHD	2.7e-26	4.2e-26	1	+ View
HMM length of domain: 169 aa c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs. i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. Domain annotation for each sequence: # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to -- ----- ---- -------- -------- ------- ------ ------- ------ --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 91.8 0.1 7.5e-30 4.2e-26 1 168 271 453 Alignments for each domain: == domain 1 score: 91.8 bits; conditional E-value: 7.5e-30 EEEEE-B-TTSE--EECCCTSSSS---BTT--SSS----EEEEES--SSEEEEEEEEESSST--B-S....SEEEST..T.EETT......EEEEE CS RHD 1 leIleqPkqrgfRfrYkcEgrsaGsipgessekskktfPtvkilnydgeakirvslvtkdeplrpHa....hslvgk..d.ckdg......vceve 83 l+Il qP+ + +R+rY++E +s+G++++ +s +fP vk+++yd +a+++v+++t++ +++pH+ +++ gk + ck+ ++e++ KWMTBOMO01671 271 LQILCQPETQ-HRARYQTE-GSRGAVKD----NSGTGFPMVKLVGYDKPAVLQVFIGTDTGRVQPHMfyqaCRVSGKnsTpCKERkedgtvIIEID 360 79******.****.9***....8899***************************9999**773688878899*** PP E-TT.TSEEE-SSEEEEE--CGGHHHHHHHHH...............HCT--TTS-TCGGCTSGGGS-TTEEEEEEEEEE-CSTTSCEEE---EEE CS RHD 84 lkpe.dmvasfqnlGIlcvkkkeveealkeri...............elkekeknvekeakeeakeidlnvvrlcFqaflpdstgnfttalepvvS 163 l+p d ++++++GIl+ ++ +ve+++ e + v+++++ + + +++r++F++ + ++++ +++ +v+S KWMTBOMO01671 361 LEPAkDWKVTCDCVGILKERNVDVEHRFGEALggvgsvgsvggvgsvG--A----VSSASHVSRGKKKSTRCRMVFRTDI--INPAGHRETLQVCS 448 99***********************9***977655331..2....333334444444569******..999999**** PP EEEEE CS RHD 164 npiyd 168 + i++ KWMTBOMO01671 449 TQIIC 453 *98 PP

Gene

Transcription Factor Family

Full Seq Evalue

Best Domain Evalue

Domain Number

Alignment Detail

KWMTBOMO01671

RHD

2.7e-26

4.2e-26

+ View

						  HMM length of domain: 169 aa

c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs.
i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. 
Domain annotation for each sequence:
#	score	bias	c-Evalue	i-Evalue	hmmfrom	hmm to	alifrom	ali to
--	-----	----	--------	--------	-------	------	-------	------
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
1	91.8	0.1	7.5e-30	4.2e-26	1	168	271	453

  Alignments for each domain:
  == domain 1  score: 91.8 bits;  conditional E-value: 7.5e-30
                    EEEEE-B-TTSE--EECCCTSSSS---BTT--SSS----EEEEES--SSEEEEEEEEESSST--B-S....SEEEST..T.EETT......EEEEE CS
            RHD   1 leIleqPkqrgfRfrYkcEgrsaGsipgessekskktfPtvkilnydgeakirvslvtkdeplrpHa....hslvgk..d.ckdg......vceve 83 
                    l+Il qP+ + +R+rY++E +s+G++++    +s  +fP vk+++yd +a+++v+++t++ +++pH+    +++ gk  + ck+       ++e++
  KWMTBOMO01671 271 LQILCQPETQ-HRARYQTE-GSRGAVKD----NSGTGFPMVKLVGYDKPAVLQVFIGTDTGRVQPHMfyqaCRVSGKnsTpCKERkedgtvIIEID 360
                    79********.********.9*******....8899*******************************9999******773688878899******* PP

                    E-TT.TSEEE-SSEEEEE--CGGHHHHHHHHH...............HCT--TTS-TCGGCTSGGGS-TTEEEEEEEEEE-CSTTSCEEE---EEE CS
            RHD  84 lkpe.dmvasfqnlGIlcvkkkeveealkeri...............elkekeknvekeakeeakeidlnvvrlcFqaflpdstgnfttalepvvS 163
                    l+p  d  ++++++GIl+ ++ +ve+++ e +                       v+++++ +  +   +++r++F++ +   ++++ +++ +v+S
  KWMTBOMO01671 361 LEPAkDWKVTCDCVGILKERNVDVEHRFGEALggvgsvgsvggvgsvG--A----VSSASHVSRGKKKSTRCRMVFRTDI--INPAGHRETLQVCS 448
                    ***99**************************9*******977655331..2....333334444444569**********..999999******** PP

                    EEEEE CS
            RHD 164 npiyd 168
                    + i++
  KWMTBOMO01671 449 TQIIC 453
                    ***98 PP