HMM length of domain: 23 aa

c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs.
i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. 
Domain annotation for each sequence:
#	score	bias	c-Evalue	i-Evalue	hmmfrom	hmm to	alifrom	ali to
--	-----	----	--------	--------	-------	------	-------	------
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
1	18.6	0.3	2.9e-05	0.0017	3	23	282	305
2	19.1	0.2	1.9e-05	0.0012	1	23	313	340
3	9.1	4.6	0.029	1.7	1	23	346	370
4	13.1	0.2	0.0016	0.095	1	23	376	401
5	21.0	0.4	5.1e-06	0.00031	1	23	407	432

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 2.9e-05
                    ET..TTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   3 Cp..dCgksFkrksnLkrHirt.H 23 
                    C+  dC+  F+++++L++Hi+t H
  KWMTBOMO16025 282 CHwvDCKLEFPTQDDLVKHINTdH 305
                    **********************99 PP

  == domain 2  score: 19.1 bits;  conditional E-value: 1.9e-05
                    EEET..TTT...EEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCp..dCg...ksFkrksnLkrHirtH 23 
                    ++C   +C+   k+Fk +++L++H+r+H
  KWMTBOMO16025 313 FVCRwvGCSrdeKPFKAQYMLVVHMRRH 340
                    899999*********************9 PP

  == domain 3  score: 9.1 bits;  conditional E-value: 0.029
                    EEET..TTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCp..dCgksFkrksnLkrHirtH 23 
                    +kC+  +C k ++r +nLk+H+r+H
  KWMTBOMO16025 346 HKCTfeGCCKAYSRLENLKTHLRSH 370
                    7899999*****************9 PP

  == domain 4  score: 13.1 bits;  conditional E-value: 0.0016
                    EEET..TTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCp..dCgksFkrksnLkrHirt.H 23 
                    y+C+  +C k F++ s+  +H+++ H
  KWMTBOMO16025 376 YTCEypGCAKAFSNASDRAKHQNRtH 401
                    99*********************999 PP

  == domain 5  score: 21.0 bits;  conditional E-value: 5.1e-06
                    EEET..TTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCp..dCgksFkrksnLkrHirt.H 23 
                    y+C+  +C+k+++++s+L++H +t H
  KWMTBOMO16025 407 YVCKapGCTKRYTDPSSLRKHVKTvH 432
                    99**********************99 PP