HMM length of domain: 23 aa

c-Evalue (conditional Evalue): It is an attempt to measure the statistical significance of each domain, given that we’ve already decided that the target sequence is a true homolog. It is the expected number of additional domains we’d find with a domain score this big in the set of sequences reported in the top hits list, if those sequences consisted only of random nonhomologous sequence outside the region that sufficed to define them as homologs.
i-Evalue (independent Evalue): The significance of the sequence in the whole database search, if this were the only domain we had identified. 
Domain annotation for each sequence:
#	score	bias	c-Evalue	i-Evalue	hmmfrom	hmm to	alifrom	ali to
--	-----	----	--------	--------	-------	------	-------	------
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
1	2.9	4.7	2.9	1.7e+02	1	23	3	25
2	19.2	4.3	1.8e-05	0.0011	1	23	31	53
3	19.6	0.1	1.4e-05	0.00084	1	23	59	81
4	15.9	0.1	0.0002	0.012	2	23	97	119
5	2.3	0.1	4.4	2.6e+02	9	23	150	165
6	5.2	0.0	0.5	30	3	23	218	238
7	20.7	1.3	6.1e-06	0.00036	1	23	281	304
8	8.3	0.1	0.053	3.2	1	23	309	332
9	16.7	0.3	0.00011	0.0068	1	23	390	414
10	14.7	0.1	0.00051	0.03	2	23	476	497
11	6.9	0.0	0.15	8.9	1	23	505	527
12	5.3	1.5	0.46	28	2	23	535	556
13	4.6	0.3	0.79	48	1	23	631	653
14	11.7	0.1	0.0043	0.26	1	20	661	680
15	6.5	0.3	0.2	12	1	23	690	712

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 2.9
                   EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2  1 ykCpdCgksFkrksnLkrHirtH 23
                   ++C+ C + Fk+k +  rH + H
  KWMTBOMO02772  3 FRCEFCARLFKHKRSRDRHVKLH 25
                   89******************999 PP

  == domain 2  score: 19.2 bits;  conditional E-value: 1.8e-05
                   EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2  1 ykCpdCgksFkrksnLkrHirtH 23
                   y+C +C   F+r+++Lk H++tH
  KWMTBOMO02772 31 YRCAHCESAFSRSDHLKIHMKTH 53
                   9*********************9 PP

  == domain 3  score: 19.6 bits;  conditional E-value: 1.4e-05
                   EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2  1 ykCpdCgksFkrksnLkrHirtH 23
                   ++C++C++ +++   L++H++ H
  KWMTBOMO02772 59 FQCTICNRGYNTAAALTSHMQGH 81
                   89******************998 PP

  == domain 4  score: 15.9 bits;  conditional E-value: 0.0002
                    EETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHirt.H 23 
                    +Cp Cg  F+r+++L+ H+ t H
  KWMTBOMO02772  97 RCPRCGDAFRRPDLLQGHMTTaH 119
                    8*******************999 PP

  == domain 5  score: 2.3 bits;  conditional E-value: 4.4
                    EESSHHHHHHHHHC.C CS
        zf-C2H2   9 sFkrksnLkrHirt.H 23 
                    +F++ ++L+ H r  H
  KWMTBOMO02772 150 TFTSMEQLQLHVRAaH 165
                    8***********9888 PP

  == domain 6  score: 5.2 bits;  conditional E-value: 0.5
                    ETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   3 CpdCgksFkrksnLkrHirtH 23 
                    C+ C+   ++ + +++H++ H
  KWMTBOMO02772 218 CNQCDAALPDFEAFRAHLKGH 238
                    ******************998 PP

  == domain 7  score: 20.7 bits;  conditional E-value: 6.1e-06
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    y+C+ C +sF+++++L++H+   H
  KWMTBOMO02772 281 YTCHSCARSFSTPDDLQKHLLDlH 304
                    9******************98766 PP

  == domain 8  score: 8.3 bits;  conditional E-value: 0.053
                    EEETTTTEEESSHHHHHHHHHC.C CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                    y+C+ C++ F +k   ++H  + H
  KWMTBOMO02772 309 YRCSLCKEIFDSKVAIQVHFAVaH 332
                    9******************88777 PP

  == domain 9  score: 16.7 bits;  conditional E-value: 0.00011
                    EEET..TTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCp..dCgksFkrksnLkrHirtH 23 
                    y+Cp   C++ F  +++L+rH++ H
  KWMTBOMO02772 390 YRCPvpACTENFAVQYLLERHMQAH 414
                    99*********************95 PP

  == domain 10  score: 14.7 bits;  conditional E-value: 0.00051
                    EETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHirtH 23 
                    +C +Cg++ +++ +L++H r H
  KWMTBOMO02772 476 QCAYCGERTRSRAELEAHTRAH 497
                    8*******************98 PP

  == domain 11  score: 6.9 bits;  conditional E-value: 0.15
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    +kC +C+++ ++   L  H  tH
  KWMTBOMO02772 505 HKCLICDEVLPSAAVLAEHKLTH 527
                    79******************999 PP

  == domain 12  score: 5.3 bits;  conditional E-value: 0.46
                    EETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   2 kCpdCgksFkrksnLkrHirtH 23 
                    +C+ C  + ++ +++ +H+ +H
  KWMTBOMO02772 535 TCSRCRARLPSEESFLTHMARH 556
                    7********************6 PP

  == domain 13  score: 4.6 bits;  conditional E-value: 0.79
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    + C  C +   ++  L++H+  H
  KWMTBOMO02772 631 HDCRLCRRALGSPTRLQAHLIEH 653
                    57******************998 PP

  == domain 14  score: 11.7 bits;  conditional E-value: 0.0043
                    EEETTTTEEESSHHHHHHHH CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHi 20 
                    ++C  C+ +F++   L+rH+
  KWMTBOMO02772 661 FTCYLCSAVFTSAAGLQRHL 680
                    89*****************7 PP

  == domain 15  score: 6.5 bits;  conditional E-value: 0.2
                    EEETTTTEEESSHHHHHHHHHCC CS
        zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                    y C+ Cg +F  + +L +H  +H
  KWMTBOMO02772 690 YDCGRCGLKFFFRAELDNHAFVH 712
                    88*****************8887 PP