SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO16874  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA010877
Annotation
30K_protein_18_[Bombyx_mori]
Location in the cell
Cytoplasmic   Reliability : 1.209 Cytoplasmic   Reliability : 1.209 Extracellular   Reliability : 1.884 Extracellular   Reliability : 1.884
 

Sequence

CDS
ATGAGCGCGCCCATCATTCCGAACAGCGCCAGAGACATTACGAGAATCGTTAACGAGCGCGTCGGCATGGTCGTCATCTACGGAATGCCGGTAGAGTCCCAGGGTATTAAGCTTCTGGCTGCCGAGCTAAAGAACAAGCTTCTGCTGTACTGTCCCGACTACGAGCTGTCCGCTTACTTACAGGAGCCGACAATGATGGACTCGCACGTGGCTTTCCTCAACAAGCAACTTCTTATGGATCTGCTGTTCAAATATTACAATCAAGCTCTGAAGCTGGACGCCAATGTTGACAGGTACAACGACCGCCTGGCCTGGGGAGACAGCAAGGACAAAACTAGTCACAGAGTGAGCTGGAAGCTTATCCCGGTATGGGAGAATAACAAGCTGCTGTATAAAATAATGAACACTGAACATACTATGTACCTGAAGCTGGACGTGAACGTAGACGGGTACGGAGACAGGCAAGCGTGGGGCTCCAACAACTCGAACGAGAAGCGCCACCTGTGGAAGCTGACGCCTGTAGTGCTGGAGACCGGCAACGTCTTACTCATAGAGAACACGAGTACGGGCAGAGTCTGA
Protein
MSAPIIPNSARDITRIVNERVGMVVIYGMPVESQGIKLLAAELKNKLLLYCPDYELSAYLQEPTMMDSHVAFLNKQLLMDLLFKYYNQALKLDANVDRYNDRLAWGDSKDKTSHRVSWKLIPVWENNKLLYKIMNTEHTMYLKLDVNVDGYGDRQAWGSNNSNEKRHLWKLTPVVLETGNVLLIENTSTGRV

Summary

Pfam
PF03260   Lipoprotein_11        + More
PF07690   MFS_1
Interpro
IPR004943   Lipoprotein_11        + More
IPR042046   Lipoprotein_11_N       
IPR035992   Ricin_B-like_lectins       
IPR011701   MFS       
IPR036259   MFS_trans_sf       
IPR020846   MFS_dom       
SUPFAM
SSF50370   SSF50370        + More
SSF103473   SSF103473       
Gene 3D
PDB
3PUB     E-value=7.98816e-18,     Score=218

Ontologies

Topology

Length:
192
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.21295
Exp number, first 60 AAs:
0.21042
Total prob of N-in:
0.05174
outside
1  -  192
 
 

Population Genetic Test Statistics

Pi
0
Theta
0
Tajima's D
0
CLR
0
CSRT
0
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
Peptides ×
Source Sequence Identity Evalue
20822545 YPYSDLPYIGQYK 100.00 2e-05
26280517 VGIIGSCTNSSYEDMGR 100.00 2e-05
25044914 VGKPVICATQMIESMVK 100.00 2e-05
28467696 VGMDDAGVYTITAK 100.00 2e-05
29197581 ITPVVIETGNVIIIENHEYGQSIK 100.00 2e-05
24402669 MVVIVDPHIK 100.00 6e-04
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