SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO16863
Annotation
PREDICTED:_uncharacterized_protein_LOC101735402_[Bombyx_mori]
Location in the cell
Extracellular   Reliability : 2.084 PlasmaMembrane   Reliability : 1.592
 

Sequence

CDS
ATGGCTTTAAGGATGTCTATGGATTTAAGATTACAATGCGGTATCCCTATACAAGGTTTCACGTTGGCCGACCTCAGCCAACTGGGCTGGCGCCAGAAAGCATGGTACTTTCTCGAGTTGGCCAAATATTGGATCGTTTGGAGGTTCGCTCTTACTGTCTTTTTCAAACCTCTTCCTTTGCCTGTAAACGGGAAAGAGACACAAAACTCGGACGCTGCTAATGCGGTTGGCTCGAACACAAATTCGAACGTGGAGAGTGACTCGCTCGTGGACAGCGTCGGCTCGAGCCGGGATTGCTGGATTTGCTACGACAGTTCCCGGGCGGAGCCCCTCATCAGGCCGTGTCGCTGCACCGGCGACGTGTCCGCCGTGCATCATGACTGCCTGAGCAGGTGGCTCGTCGAGAGTGCCGCCTCGCCTGACGGCTTGAAGTGCAAAGTCTGCAACACTCCCTACATCGTCCAGGAGACCAATCGAGTGGAGTGGGAGCGCGGGTTCACGTGGTCGCACTGGGCGGGCACCGCGGCCGCCGTCACCGCGCTCACCGGTGCCGCGGCCGGCGCCTGGGCCCTCGCGCAGCTCTACCCCTCCTCCCTCGTGCGCGTGCTCGCCGCCGGCGCCGCGCTGCTCGTCTGCTACGTCGCGCTCAGATTCCTGGGCACGAACACGGTGTCGGCGTACCACCGGGCCCGCGTCTACGGCCTGAAGATCCTGACGGAGCCCTTCGCCGACGTCCAGGACTCGGAGCAGGGTCAGCTGTCGACCATCAGCAGGACGGTGACCGTCGAGATCGCGCCGAAGGACGTCCTCGACCAAGCGCTCAAGGGCGAAGCGAAATAG
Protein
MALRMSMDLRLQCGIPIQGFTLADLSQLGWRQKAWYFLELAKYWIVWRFALTVFFKPLPLPVNGKETQNSDAANAVGSNTNSNVESDSLVDSVGSSRDCWICYDSSRAEPLIRPCRCTGDVSAVHHDCLSRWLVESAASPDGLKCKVCNTPYIVQETNRVEWERGFTWSHWAGTAAAVTALTGAAAGAWALAQLYPSSLVRVLAAGAALLVCYVALRFLGTNTVSAYHRARVYGLKILTEPFADVQDSEQGQLSTISRTVTVEIAPKDVLDQALKGEAK

Summary

Pfam
PF12906   RINGv        + More
PF18720   EGF_Tenascin
PF06454   DUF1084
Interpro
IPR013083   Znf_RING/FYVE/PHD        + More
IPR011016   Znf_RING-CH       
IPR041161   EGF_Tenascin       
IPR009457   DUF1084       
IPR013032   EGF-like_CS       
Gene 3D
PDB
2D8S     E-value=0.000139702,     Score=106

Ontologies

Topology

Length:
279
Number of predicted TMHs:
2
Exp number of AAs in TMHs:
45.32767
Exp number, first 60 AAs:
1.09774
Total prob of N-in:
0.90421
inside
1  -  166
TMhelix
167  -  189
outside
190  -  198
TMhelix
199  -  221
inside
222  -  279
 
 

Population Genetic Test Statistics

Pi
0
Theta
0
Tajima's D
0
CLR
0
CSRT
0
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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