SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO16845  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA008956
Annotation
PREDICTED:_protein_lin-54_homolog_[Bombyx_mori]
Location in the cell
Mitochondrial   Reliability : 1.945 Nuclear   Reliability : 1.472
 

Sequence

CDS
ATGCCGCGACAAGTGCCAATAGCGCCGAAGCCCCGCCTGTCGCAGACGACCAAACCGAAGACCACGTTCGGTCCGGGCAAGCAATACGCCATCGCGCCGAAACCTGTTACGTTTGTGATGAATAAAAATACAAAAAAAGTCTCAGTAGCCGGTGTACAAGCAAACTCAAAAGGCAATGCTGTACTAGCTCAAATTGGTAAGCAGTTAGTTATGGTACCAGCTGAAGGAGCACAGAAAATTAAGCTGGTGTCTGCCGGATCAGGTGCCACTCTCCAATATGTACGAGCTAATTCTGATCAGGCACAGTTAACACCAGCAAAGGCCGCCGGAACAACTCAAGCTAAGCCTTTAGTGGCTAAGGTCGTAGTGCAAGGTAAGCGCTCGTCACCTCCACTCACGCGCTGA
Protein
MPRQVPIAPKPRLSQTTKPKTTFGPGKQYAIAPKPVTFVMNKNTKKVSVAGVQANSKGNAVLAQIGKQLVMVPAEGAQKIKLVSAGSGATLQYVRANSDQAQLTPAKAAGTTQAKPLVAKVVVQGKRSSPPLTR

Summary

Pfam
PF03638   TCR        + More
PF01145   Band_7
PF00856   SET
Interpro
IPR033467   Tesmin/TSO1-like_CXC        + More
IPR001107   Band_7       
IPR033294   Erlin1/2       
IPR005172   CRC       
IPR028307   Lin-54_fam       
IPR001214   SET_dom       

Ontologies

Topology

Length:
134
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00142
Exp number, first 60 AAs:
0.00084
Total prob of N-in:
0.15329
outside
1  -  134
 
 

Population Genetic Test Statistics

Pi
0
Theta
0
Tajima's D
0
CLR
0
CSRT
0
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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