Gene

KWMTBOMO16840

Pre Gene Modal

BGIBMGA008832

Annotation

Retrovirus-related_Pol_polyprotein_from_transposon_TNT_1-94_[Papilio_machaon]

Location

Bomo_Scaf410(-):14188-15235      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.788 Nuclear   Reliability : 1.172

CDS

ATGAGCTACCCACTATTCTCCGCTGAGGCAAGCTTCGTGAGATTAGTCGACAACCCTGATGATCCCCAGACTGCAGCCGAGGCCTTAAACGGGCCTGAATCGGACAGTTGGAGAAAGGCAATGACAGATGAGTATAATTCCTTTGTTAAGAACAAGTGTTGGACCCTGACTGAGCATGAACCCAGCCGCAAACCAGTCAAATGTAAATGGATTTTTAAAAGAAAATATGGAGCAGATGGAGAGTTACTAAAGTATAAAGCTCGTTTAGTTGCCAAGGGTTACACACAGAAGTACGGTGTTGATTATCAAGAGACTTTTTCACCAGTGGTAAGGTACTCCACAATTAGGATTTTACTTGCTTTAGCAGCTGAACATGGCCTGTCCATTGAGCACCTGGATGTCAAAACGGCGTTCCTTAATGGCGACCTCGAGGAAACTGTATACATGGAGCAGCCAGAGTTCTTTGAAGAAAAAGGAAAAGAGAACATGGTGTACAGGCTAAATAAAGCTGTGTACGGCTTAAAACAGGCATCCAAGACATGCTCTCTATGTCGATGA

Protein

MSYPLFSAEASFVRLVDNPDDPQTAAEALNGPESDSWRKAMTDEYNSFVKNKCWTLTEHEPSRKPVKCKWIFKRKYGADGELLKYKARLVAKGYTQKYGVDYQETFSPVVRYSTIRILLALAAEHGLSIEHLDVKTAFLNGDLEETVYMEQPEFFEEKGKENMVYRLNKAVYGLKQASKTCSLCR

Uniprot

A0A2A4IXU5   A0A0N1ICY1   A0A2N9J203   A0A151SYF7   Q94HX0   A0A2U1Q6X4   + More
A0A182HDZ7   A0A2Z7CVT6   Q109M4   A0A2B4R8Q4   A0A2N9GNZ7   Q8LN71   A0A2N9GRB2   A0A2Z7C5M8   A0A251V1U7   A0A251UMH8   A0A251V8V0   A0A251UUX3   A0A2N9EVE4   Q109E4   A0A2Z7CZB6   A0A151THY7   A0A151TF54   A0A2K3KYW3   A0A2N9J5Y1   A0A251SKU0   A0A2N9IT45   I1PQ20   A0A2N9E6G7   A0A2N9FK26   A0A2N9EXI3   A0A2N9HJ76   Q10SN7   A0A2N9I6R9   A0A2N9I2Y6   A0A445J0X7   A0A2N9I8F7   A0A2N9GYW9   A0A2N9ER08   A0A2N9J5P5   A0A2N9HJG1   A0A2N9IGQ9   Q2QW98   A0A2N9EIR6   A0A438GMN1   A0A2N9EMG6   A0A2N9GGW7   A0A2N9J6C2   A0A2N9FV67   A0A438BME9   A0A2N9IWT1   A0A2N9H7K3   A0A2N9GCG9   A0A2N9EM80   A0A2N9GHK3   A0A2N9FL83   A0A2N9GX47   A0A2N9ELY1   A0A2N9HJF5   A0A2N9FRN5   A0A2N9G4M2   A0A2N9I8Q5   A0A2N9GBF3   A0A2N9HZS3   A0A2N9HZR4   A0A2N9IB18   A0A2N9GMG5   A0A2N9EK90   A0A251VJJ5   Q2QPG2   A0A2N9FQJ1   A0A2N9GGS7   A0A2N9FSJ8   A0A2N9EYI8   A0A2N9ETC8   A0A2N9IGN4   A0A2N9FW82   A0A2N9GA80   Q53P61   Q8S7B6   A0A2N9EHW3   A0A2K3MAN7   Q2QTW9   B9FX63   Q10D77   A0A2Z7APY0   A0A2N9I1P0   A0A2N9FVE8   Q8S7H7   A0A2N9I7K4   Q8LNA0   A0A2N9I9F7   A0A2N9ISP1   A0A2N9EKI7   Q7Y0F7   Q5W6C4   A0A2N9FZ01   Q337D5   Q2QUS2   A0A2N9H4V1  

Pubmed

26354079    22057054    29703587    26483478    25902549    12791992    + More
28538728    24500806    28382043    16109971    16188032    30458008    15685292   

EMBL

NWSH01004969    PCG64541.1    KQ460882    KPJ11482.1    OIVN01006335    SPD30828.1    + More
CM003612    KYP59836.1    AC025296    AAK39592.1    PKPP01000362    PWA93738.1    JXUM01130663    KQ567605    KXJ69347.1    KQ992547    KZV50107.1    DP000086    ABG66099.1    LSMT01001145    PFX12880.1    OIVN01002503    SPD04186.1    AC091122    AAM94928.1    OIVN01002268    SPD02135.1    KV000919    KZV39555.1    CM007893    OTG29580.1    CM007894    OTG24314.1    CM007892    OTG32030.1    OTG26849.1    OIVN01000350    SPC78805.1    ABG66192.1    KQ991591    KZV51625.1    CM003608    KYP66596.1    KYP65681.1    ASHM01023333    PNX71449.1    OIVN01006381    SPD31869.1    CM007903    OTF98090.1    OIVN01006204    SPD27708.1    OIVN01000113    SPC74546.1    OIVN01001208    SPC91157.1    OIVN01000395    SPC79545.1    OIVN01003897    SPD14257.1    DP000009    ABF93649.1    OIVN01004921    SPD19975.1    OIVN01004614    SPD18379.1    QZWG01000009    RZB91995.1    OIVN01005068    SPD20708.1    OIVN01002564    SPD04723.1    OIVN01000260    SPC77255.1    OIVN01006372    SPD31671.1    OIVN01003534    SPD11893.1    OIVN01005646    SPD23424.1    DP000011    ABA96091.1    OIVN01000116    SPC74628.1    QGNW01000392    RVW73434.1    OIVN01000191    SPC75975.1    OIVN01002224    SPD01757.1    OIVN01006429    SPD32977.1    OIVN01001196    SPC91020.1    QGNW01002719    RVW12147.1    OIVN01006238    SPD28613.1    OIVN01002940    SPD07631.1    OIVN01001733    SPC97079.1    OIVN01000189    SPC75922.1    OIVN01002247    SPD01987.1    OIVN01000958    SPC87933.1    OIVN01002491    SPD04083.1    OIVN01000183    SPC75833.1    OIVN01003558    SPD12118.1    OIVN01001091    SPC89740.1    OIVN01001484    SPC94512.1    OIVN01005024    SPD20514.1    OIVN01001669    SPC96464.1    OIVN01004423    SPD17240.1    OIVN01004420    SPD17230.1    OIVN01005186    SPD21283.1    OIVN01002444    SPD03657.1    OIVN01000147    SPC75222.1    CM007891    OTG34881.1    ABA98785.1    OIVN01001052    SPC89229.1    OIVN01001890    SPC98658.1    OIVN01001130    SPC90232.1    OIVN01000404    SPC79669.1    OIVN01000557    SPC82046.1    OIVN01005657    SPD23465.1    OIVN01001520    SPC94877.1    OIVN01001666    SPC96375.1    AC128644    DP000010    AAX96353.1    ABA91827.1    AC090482    AAM00978.1    AAP53107.1    OIVN01000095    SPC74169.1    ASHM01054917    PNX87842.1    ABA97124.1    CM000144    EEE67150.1    ABF99156.1    KV013340    KZV23924.1    OIVN01004603    SPD18338.1    OIVN01001202    SPC91100.1    AC084748    AAM19019.1    OIVN01005334    SPD21977.1    AC090870    AAM95676.1    OIVN01005059    SPD20680.1    OIVN01006233    SPD28466.1    OIVN01000151    SPC75285.1    AC133932    AAP50927.1    ABF96500.1    AC136522    AAV43959.2    OIVN01001309    SPC92453.1    ABB47865.2    ABA96959.2    OIVN01002854    SPD06945.1   

Proteomes

UP000218220    UP000053240    UP000075243    UP000245207    UP000069940    UP000249989    + More
UP000225706    UP000215914    UP000236291    UP000007306    UP000289340    UP000288805   

Pfam

PF07727   RVT_2        + More
PF13976   gag_pre-integrs
PF00665   rve
PF13961   DUF4219
PF00098   zf-CCHC

Interpro

IPR013103   RVT_2        + More
IPR039537   Retrotran_Ty1/copia-like       
IPR036875   Znf_CCHC_sf       
IPR012337   RNaseH-like_sf       
IPR001878   Znf_CCHC       
IPR001584   Integrase_cat-core       
IPR025314   DUF4219       
IPR025724   GAG-pre-integrase_dom       
IPR036397   RNaseH_sf       
IPR001995   Peptidase_A2_cat       

SUPFAM

SSF53098   SSF53098        + More
SSF57756   SSF57756       

Gene 3D

3.30.420.10    

ProteinModelPortal

A0A2A4IXU5   A0A0N1ICY1   A0A2N9J203   A0A151SYF7   Q94HX0   A0A2U1Q6X4   + More
A0A182HDZ7   A0A2Z7CVT6   Q109M4   A0A2B4R8Q4   A0A2N9GNZ7   Q8LN71   A0A2N9GRB2   A0A2Z7C5M8   A0A251V1U7   A0A251UMH8   A0A251V8V0   A0A251UUX3   A0A2N9EVE4   Q109E4   A0A2Z7CZB6   A0A151THY7   A0A151TF54   A0A2K3KYW3   A0A2N9J5Y1   A0A251SKU0   A0A2N9IT45   I1PQ20   A0A2N9E6G7   A0A2N9FK26   A0A2N9EXI3   A0A2N9HJ76   Q10SN7   A0A2N9I6R9   A0A2N9I2Y6   A0A445J0X7   A0A2N9I8F7   A0A2N9GYW9   A0A2N9ER08   A0A2N9J5P5   A0A2N9HJG1   A0A2N9IGQ9   Q2QW98   A0A2N9EIR6   A0A438GMN1   A0A2N9EMG6   A0A2N9GGW7   A0A2N9J6C2   A0A2N9FV67   A0A438BME9   A0A2N9IWT1   A0A2N9H7K3   A0A2N9GCG9   A0A2N9EM80   A0A2N9GHK3   A0A2N9FL83   A0A2N9GX47   A0A2N9ELY1   A0A2N9HJF5   A0A2N9FRN5   A0A2N9G4M2   A0A2N9I8Q5   A0A2N9GBF3   A0A2N9HZS3   A0A2N9HZR4   A0A2N9IB18   A0A2N9GMG5   A0A2N9EK90   A0A251VJJ5   Q2QPG2   A0A2N9FQJ1   A0A2N9GGS7   A0A2N9FSJ8   A0A2N9EYI8   A0A2N9ETC8   A0A2N9IGN4   A0A2N9FW82   A0A2N9GA80   Q53P61   Q8S7B6   A0A2N9EHW3   A0A2K3MAN7   Q2QTW9   B9FX63   Q10D77   A0A2Z7APY0   A0A2N9I1P0   A0A2N9FVE8   Q8S7H7   A0A2N9I7K4   Q8LNA0   A0A2N9I9F7   A0A2N9ISP1   A0A2N9EKI7   Q7Y0F7   Q5W6C4   A0A2N9FZ01   Q337D5   Q2QUS2   A0A2N9H4V1  

KEGG

NA   

GO

GO:0000943   GO:0015074   GO:0008270   GO:0003676   GO:0016021   GO:0004190  

PANTHER

PTHR11439  

Length:

185

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00346

Exp number, first 60 AAs:

0

Total prob of N-in:

0.02753

outside

1  -  185

 

 

Pi

0

Theta

0

Tajima's D

0

CLR

0

CSRT

0

Interpretation

Uncertain