SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO16836
Annotation
PREDICTED:_lipopolysaccharide-induced_tumor_necrosis_factor-alpha_factor_homolog_[Bombyx_mori]
Transcription factor
Location in the cell
Extracellular   Reliability : 2.984
 

Sequence

CDS
ATGAAATCAATCAAGTCTGTGCTAGCGCTCTCGTCTTTAACAGATTTGAAGGCTTACCGCTCACCCAAAGGTACTAATTTTACAATTTTTTTAGATAAAGCAGATTTGTCTGGCACACACTTCGTACGCCGCATCAGAACCGCCACCGTACGTCACCCAACCACAACCAGGAATATATCCTGCATATCCTGCCGTACCTCCTCAACAGGTCGTGGCAGTCGTACCAGTAGTAAGGCAAATGGACCTGATCCTTCACATTATACATGTCCGTCTTGTAATACGGCCATCGTCACTAGAGTAGAACGTGTTTCCACGACAAAGACACATCTGTTTGCTGCTCTTCTTTGCTTAATAGGTTGTTGGCCATGCGTTTGCATTCCTTACTGCACGAATAGCTGCCAAAATGCTGAGCATTATTGCCCGAACTGCAGCGCGTACATCGGAAACTACAGCAGTTAA
Protein
MKSIKSVLALSSLTDLKAYRSPKGTNFTIFLDKADLSGTHFVRRIRTATVRHPTTTRNISCISCRTSSTGRGSRTSSKANGPDPSHYTCPSCNTAIVTRVERVSTTKTHLFAALLCLIGCWPCVCIPYCTNSCQNAEHYCPNCSAYIGNYSS

Summary

Uniprot
Pfam
PF10601   zf-LITAF-like
Interpro
IPR006629   LITAF        + More
IPR037519   LITAF_fam       
ProteinModelPortal

Ontologies

GO

Topology

Length:
152
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
7.19353
Exp number, first 60 AAs:
0.00132
Total prob of N-in:
0.29562
outside
1  -  152
 
 

Population Genetic Test Statistics

Pi
0
Theta
0
Tajima's D
0
CLR
0
CSRT
0
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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