Silkworm Genome Informatics Database

Gene

KWMTBOMO16827

Annotation

reverse_transcriptase_[Bombyx_mori]

Location

Bomo_Scaf353(+):10126-12418 View in EpiBrowser

Location in the cell

Mitochondrial Reliability : 1.751 Peroxisomal Reliability : 1.431

CDS

ATGCATGACGCTGAGACCGCCTTTTACCGGGAGATCGCTGAAGGGGGAAACCGTGACCCGTGGGGACTAGCGTATCGGACGGCGAGTGGTAGGCGACGCGCACCAACTAATGTGGTTAACGGGGTGGAGTATGCGGGGCGGTGCTCGGATGATGTGAGTGGGGCCATGCGCACCTTGATGTGGGCGCTGTGTCCGGATGACTATATGTCTCGGGACACTCCGTACCATGCGCGGGTGCGTATCATGGCCGCGCTCCCCCCATCCGGGCGGGACGCAGACCCGCTGAGCAAAGACTCCCTTCGTGCCATAATTGGCTCACTGAAGAATACCGCACCGGGCATCGACGGTTTAACGGCGCGCATTATCAAAAAGGCACTTCCGGCTGCTGAGGCCGAGTTCGTGGCCGTATACGCACGGGGAAAGTTTCAGCGTCCCCCTATAGTCCGGTACGGCAGTCATGTCATTCGGTTCGAGAACCAGGTGACGGTGTTGGGCGTCGTCTTCGACGATTGCCTCTCTTTCGCGCCGCATGCGGCGGCCATTGGCGAGAGGGCGAGCAGGTGCTTCGGCAAGATGTCTAGAGTTTCGGCTTCGGCTTGGGGGCTGCGATATAGGGCTTTGCGTGTCTTGTACATGGGCACTTATGTTACAACCCTTACCTATGCGGCGGCCGTATGGTATTTGCGGGCTGCTGTGCACGTCGTGCGCAGCGTGCTGCTTAGGACGCAGCGCCCGTCGTTGACGCTGCTAACGAAGGCCTACCGTTCGTGCAGCACGGCTGCTTTGCCGGTGTTGGCGGCGTCCTGCCGGCGGACCTGGAGGAAGAAGGCAACGTGGATGGAGCCGGACTATCAGACCTCGCAGATCCTCACGGGTCATGGGATCTTTAATAAGCGGTTGGCGGATATGCGACTGAGGGAGGGGCATGCTTGCGACTGCGGGGCGGTTGAGGAGGATAGGGACCATGTCCTGTGGGAGTGTCCTCTCTATGACGAAATCCGGGGCAGGATGCTCGATGGAATCTCGCGGTCTGAGGTGGGCCCAGTTTACCACGCGGACCTGGTCAGGGACGAGAAAAATTTTCGGCTCTTGCGCGAGTTCGCGCATACATGGCACACGGCGCGCACTGCGCGCGAATCACGAGGACTGCCTGGCGACGAAGAATGTGGGTGA

Protein

MHDAETAFYREIAEGGNRDPWGLAYRTASGRRRAPTNVVNGVEYAGRCSDDVSGAMRTLMWALCPDDYMSRDTPYHARVRIMAALPPSGRDADPLSKDSLRAIIGSLKNTAPGIDGLTARIIKKALPAAEAEFVAVYARGKFQRPPIVRYGSHVIRFENQVTVLGVVFDDCLSFAPHAAAIGERASRCFGKMSRVSASAWGLRYRALRVLYMGTYVTTLTYAAAVWYLRAAVHVVRSVLLRTQRPSLTLLTKAYRSCSTAALPVLAASCRRTWRKKATWMEPDYQTSQILTGHGIFNKRLADMRLREGHACDCGAVEEDRDHVLWECPLYDEIRGRMLDGISRSEVGPVYHADLVRDEKNFRLLREFAHTWHTARTARESRGLPGDEECG

Uniprot

A0A2W1BCT4 J9M112 J9JYN9 A0A2S2PB75 J9KSJ8 J9KPC7 + More
J9LES5 J9LPX0 J9KCR1 J9KA38 A0A1B6FSS1 A0A1B6LVQ6 J9JY36 J9LQV9 J9LMF6 J9L7F7 X1XMI2 J9M4Z2

Pubmed

28756777

EMBL

KZ150483 PZC70720.1 ABLF02012122 ABLF02011142 GGMR01014080 MBY26699.1 + More
ABLF02008578 ABLF02034348 ABLF02008889 ABLF02041820 ABLF02020044 ABLF02026040 ABLF02004773 GECZ01016512 JAS53257.1 GEBQ01012211 JAT27766.1 ABLF02019664 ABLF02014982 ABLF02016436 ABLF02005542 ABLF02016398 ABLF02010036 ABLF02067222 ABLF02010919 ABLF02010923 ABLF02010931

Proteomes

UP000007819

Pfam

PF00078   RVT_1        + More
PF14529   Exo_endo_phos_2
PF03184   DDE_1

Interpro

IPR000477   RT_dom        + More
IPR036691   Endo/exonu/phosph_ase_sf
IPR001878   Znf_CCHC
IPR005135   Endo/exonuclease/phosphatase
IPR036875   Znf_CCHC_sf
IPR036397   RNaseH_sf
IPR012337   RNaseH-like_sf
IPR004875   DDE_SF_endonuclease_dom

SUPFAM

SSF56219   SSF56219        + More
SSF57756   SSF57756
SSF53098   SSF53098

Gene 3D

3.60.10.10 3.30.420.10

ProteinModelPortal

A0A2W1BCT4 J9M112 J9JYN9 A0A2S2PB75 J9KSJ8 J9KPC7 + More
J9LES5 J9LPX0 J9KCR1 J9KA38 A0A1B6FSS1 A0A1B6LVQ6 J9JY36 J9LQV9 J9LMF6 J9L7F7 X1XMI2 J9M4Z2

KEGG

NA

GO

GO:0003676 GO:0008270

Length:

390

Number of predicted TMHs:

1

Exp number of AAs in TMHs:

20.1013

Exp number, first 60 AAs:

0

Total prob of N-in:

0.63817

inside

1 - 208

TMhelix

209 - 231

outside

232 - 390

Pi

0

Theta

0

Tajima's D

0

CLR

0

CSRT

0

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree