Gene

KWMTBOMO16819

Annotation

T18197_reverse_transcriptase-like_protein_-_silkworm

Location

Bomo_Scaf325(+):5616-7882      View in EpiBrowser

Full name

Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2       + More
Retrovirus-related Pol polyprotein from type-2 retrotransposable element R2DM      

Alternative Name

Retrovirus-related Pol polyprotein from type I retrotransposable element R2
Retrovirus-related Pol polyprotein from type II retrotransposable element R2DM

Location in the cell

Cytoplasmic   Reliability : 1.977 Mitochondrial   Reliability : 1.4

CDS

ATGATGGTGAAGCGGCGGTGGCATGGCGAGGAAATCGACCTCCTCGCTCGCACCGAGGCCAGGTTGCTCGCTGAGCGGGGTCAGTGCTCGGGTGGAGACCTCTTTGGCGCGCTTCCAGGGTTTGGAAGAACTCTGGAAGCGATTAAGGGACAACGGCGGAGGGAGCCTTATCGGGCATTGGTGCAAGCGCACCTTGCCCGATTTGGTTCCCAGCCGGGTCCCTCGTCAGGGGGGTGCTCGGCCGAGCCTGACTTCCGGCGGGCTTCTGGAGCTGAGGAAGCGGGCGAGGAACGATGCGCCGAAGACGCCGCTGCCTATGATCCATCCGCAGTCGAGTACGCGCGTGTGCAGGAACTGTACAAGAAGTGTCGCAGCAGAGCAGCAGCTGAGGTGATCGATGGCGCGTGTGGGGGTGTCGGACACTCGCTCGAGGAGATGGAGACCTATTGGCGACCTATCCTCGAGAGAGTGTCCGATGCACCTGGGCCTACACCGGAAGCTCTTCACGCCCTAGGGCGTGCGGAGTTGCACGGGGGCAATCGCGACTACACCCAGCTGTGGAAGCCGATCTCGGTGGAAGAGATCAAGGCCTCCCGCTTTGACTGGCGAACTTCGCCGGGCCCGGACGGTATACGTTCGGGTCAGTGGCGTGCGGTTCCTGTGCACTTGAAGGCGGAAATGTTCAATGCATGGATGGCACGAGGCGAAATACCCGAAATTCTACGGCAGTGCCGAACCGTCTTTGTGCCTAAGGTGGAGAGACCAGGTGGACCGGGGGAATATCGACCGATCTCGATCGCGTCGATTCCCCTGAGACACTTTCACTCCATCTTGGCCCGGAGGCTGTTGGCTTGCTGCCCCCCTGATGCACGACAGCGCGGATTTATCTGCGCCGACGGTACGCTGGAGAATTCCGCAGTACTGGACGCGGTGCTTGGGGATAGCAGGAAGAAGCTGCGGGAATGTCACGTGGCGGTGCTAGACTTCGCCAAGGCATTTGACACAGTGTCTCACGAGGCACTTGTCGAATTGCTGAGGTTGAGGGGCATGCCCGAACAGTTCTGCGGCTACATTGCTCACTTATACGATACGGCGTCCACCACCTTAGCCGTGAACAATGAAATGAGCAGCCCTGTGAAAGTGGGACGAGGGGTTCGTCAAGGGGACCCTCTGTCGCCGATACTCTTCAACGTGGTGATGGACCTCATCCTAGCTTCCCTGCCGGAGAGGGTCGGGTATAGGTTGGAGATGGAACTTGTGTCCGCTCTGGCCTATGCTGACGACCTAGTCCTGCTTGCGGGGTCGAAGGTAGGGATGCAGGAGTCCATCTCTGCTGTGGACTGTGTTGGTAAGCAGATGGGCCTACGCCTGAATTGCAGGAAGAGCGCGGTTCTGTCTATGATACCGGATGGCCACCGCAAGAAGCATCACTACCTGACTGAGCGAACCTTCAATATTGGAGGTAAGCCGCTCAGGCAGGTGAGTTGTGTTGAGCGGTGGCGATATCTTGGTGTCGATTTTGAGGCCTCTGGATGCGTGACATTAGAGCATAGTATCAGTAGTGCTCTGAATAACATCTCAAGGGCACCTCTCAAACCCCAACAGAGGTTGGAGATTTTGAGAGCTCATCTGATTCCGAGATTCCAGCACGGTTTTGTGCTGACCGATTGA

Protein

MMVKRRWHGEEIDLLARTEARLLAERGQCSGGDLFGALPGFGRTLEAIKGQRRREPYRALVQAHLARFGSQPGPSSGGCSAEPDFRRASGAEEAGEERCAEDAAAYDPSAVEYARVQELYKKCRSRAAAEVIDGACGGVGHSLEEMETYWRPILERVSDAPGPTPEALHALGRAELHGGNRDYTQLWKPISVEEIKASRFDWRTSPGPDGIRSGQWRAVPVHLKAEMFNAWMARGEIPEILRQCRTVFVPKVERPGGPGEYRPISIASIPLRHFHSILARRLLACCPPDARQRGFICADGTLENSAVLDAVLGDSRKKLRECHVAVLDFAKAFDTVSHEALVELLRLRGMPEQFCGYIAHLYDTASTTLAVNNEMSSPVKVGRGVRQGDPLSPILFNVVMDLILASLPERVGYRLEMELVSALAYADDLVLLAGSKVGMQESISAVDCVGKQMGLRLNCRKSAVLSMIPDGHRKKHHYLTERTFNIGGKPLRQVSCVERWRYLGVDFEASGCVTLEHSISSALNNISRAPLKPQQRLEILRAHLIPRFQHGFVLTD

Catalytic Activity

a 2'-deoxyribonucleoside 5'-triphosphate + DNA(n) = diphosphate + DNA(n+1)

Keywords

Complete proteome   Endonuclease   Hydrolase   Metal-binding   Nuclease   Nucleotidyltransferase   Reference proteome   RNA-directed DNA polymerase   Transferase   Transposable element   Zinc   Zinc-finger   Aspartyl protease   Protease  

Feature

chain  Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2

Uniprot

V9H052   Q8MY64   Q5K671   A0A023EX97   A0A0J7KIZ7   A0A0C9QX33   + More
A0A0J7KIJ3   K7JR53   K7JCX5   A0A023EXT5   A0A023EX96   A0A336N1I0   Q03278   A0A2S2Q7J7   A0A1E1X8Y7   A0A1A9VZG3   A0A139W9T2   A0A224XHH5   B8Y0J4   P16423   A0A0K8S7M2   A0A0A9VQ34   A0A1E1X218   A0A131YXA3   A0A146KWA5   J9M3R0   Q76IP0   K7JWP8   O44319   I7AEJ4   A0A0R4WRV8   I7A3V0   Q76IP1   A0A2R7WW67   K7JX42   O44316   K7JWL4   C6F3W3   O44323   A0A293LU33   A0A293LGQ3   A0A1Z5LEY2   A0A077B0I4   A0A293M998   Q03279   A0A293LBM6   K7JPM5   A0A1E1XIZ0   A0A131Z2I9   A0A443S7I1   A0A0K8TDX3   A0A0J7N6L9   A0A443SGA8   A0A443S3P0   Q76IN9   A0A096XIE1   I7BCK2   I7B001   A0A443SAG7   A0A1Z5L9B1   A0A183A234   K7JYZ8   A0A444T140   A0A293MQP9   A0A183NB95   A0A0J7KJU5   A0A401RGU1   A0A146PDW8   A0A0V1C720   A0A3B5M253   A0A146Q2A4   A0A146U0K0   A0A146QWB2   W5NKD0   A0A146RSK6  

Pubmed

2439905    14999096    25474469    20075255    8383793    28503490    + More
18362917    19820115    19350401    1690812    25401762    26830274    26823975    12949131    9515960    10331276    22564473    9927458    28528879    30297745   

EMBL

M16558    AAB59214.1    AB076841    BAC01114.1    AF436853    AAQ04479.1    + More
GBBI01004849    JAC13863.1    LBMM01006940    KMQ90176.1    GBYB01008309    JAG78076.1    LBMM01007077    KMQ90064.1    AAZX01002322    AAZX01010802    AAZX01015897    GBBI01004906    JAC13806.1    GBBI01004905    JAC13807.1    UFQS01003262    UFQT01003262    SSX15424.1    SSX34793.1    L00950    GGMS01004512    MBY73715.1    GFAC01003453    JAT95735.1    KQ971997    KYB24671.1    GFTR01008394    JAW08032.1    FJ461304    ACJ71597.1    X51967    GBRD01016678    JAG49149.1    GBHO01045037    GBHO01045036    JAF98566.1    JAF98567.1    GFAC01005869    JAT93319.1    GEDV01005279    JAP83278.1    GDHC01017848    JAQ00781.1    ABLF02003433    AB097122    BAC82590.1    AAZX01010801    AAZX01015898    AF015815    AAC34903.1    JN937617    AFO19996.1    JQ082370    AFM44926.1    JN937619    AFO19998.1    AB097121    BAC82589.1    KK855758    PTY23787.1    AAZX01023288    AF015685    AAB94032.1    AAZX01023287    EU854578    ACJ46647.1    AF015819    AAC34906.1    GFWV01007503    MAA32233.1    GFWV01002964    MAA27694.1    GFJQ02001120    JAW05850.1    KJ958674    AIL01110.1    GFWV01012635    MAA37364.1    L00951    GFWV01001114    MAA25844.1    AAZX01024756    AAZX01024918    GFAC01000014    JAT99174.1    GEDV01003881    JAP84676.1    NCKV01006447    RWS23444.1    GBRD01002048    JAG63773.1    LBMM01009160    KMQ88340.1    NCKV01002648    RWS26564.1    NCKV01009665    RWS22147.1    AB097123    BAC82591.1    KF925878    AHN53448.1    JN937618    AFO19997.1    JN937616    AFO19995.1    NCKV01004782    RWS24512.1    GFJQ02003336    JAW03634.1    UZAN01004728    VDP32110.1    AAZX01010936    SAUD01015940    RXG59362.1    GFWV01017530    MAA42258.1    UZAI01021487    VDP55649.1    LBMM01006509    KMQ90547.1    BEZZ01008166    GCC17378.1    GCES01144752    JAQ41570.1    JYDI01000477    KRY44798.1    GCES01136315    JAQ50007.1    GCES01088356    JAQ97966.1    GCES01125908    JAQ60414.1    AHAT01035183    GCES01115013    JAQ71309.1   

Proteomes

UP000036403    UP000002358    UP000091820    UP000007266    UP000007819    UP000288716    + More
UP000050740    UP000288706    UP000050790    UP000277204    UP000287033    UP000054653    UP000261380    UP000018468   

PRIDE

V9H052    Q8MY64    Q5K671    Q03278    P16423   

Pfam

PF00078   RVT_1        + More
PF00096   zf-C2H2

Interpro

IPR013087   Znf_C2H2_type        + More
IPR000477   RT_dom       
IPR036236   Znf_C2H2_sf       
IPR001005   SANT/Myb       

SUPFAM

SSF57667   SSF57667       

CDD

cd00167  SANT

ProteinModelPortal

V9H052   Q8MY64   Q5K671   A0A023EX97   A0A0J7KIZ7   A0A0C9QX33   + More
A0A0J7KIJ3   K7JR53   K7JCX5   A0A023EXT5   A0A023EX96   A0A336N1I0   Q03278   A0A2S2Q7J7   A0A1E1X8Y7   A0A1A9VZG3   A0A139W9T2   A0A224XHH5   B8Y0J4   P16423   A0A0K8S7M2   A0A0A9VQ34   A0A1E1X218   A0A131YXA3   A0A146KWA5   J9M3R0   Q76IP0   K7JWP8   O44319   I7AEJ4   A0A0R4WRV8   I7A3V0   Q76IP1   A0A2R7WW67   K7JX42   O44316   K7JWL4   C6F3W3   O44323   A0A293LU33   A0A293LGQ3   A0A1Z5LEY2   A0A077B0I4   A0A293M998   Q03279   A0A293LBM6   K7JPM5   A0A1E1XIZ0   A0A131Z2I9   A0A443S7I1   A0A0K8TDX3   A0A0J7N6L9   A0A443SGA8   A0A443S3P0   Q76IN9   A0A096XIE1   I7BCK2   I7B001   A0A443SAG7   A0A1Z5L9B1   A0A183A234   K7JYZ8   A0A444T140   A0A293MQP9   A0A183NB95   A0A0J7KJU5   A0A401RGU1   A0A146PDW8   A0A0V1C720   A0A3B5M253   A0A146Q2A4   A0A146U0K0   A0A146QWB2   W5NKD0   A0A146RSK6  

PDB

6AR3     E-value=0.0237032,     Score=90

KEGG

NA   

GO

GO:0003964   GO:0003676   GO:0004519   GO:0046872   GO:0004190  

Length:

556

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.01012

Exp number, first 60 AAs:

0.0014

Total prob of N-in:

0.00414

outside

1  -  556

 

 

Pi

0

Theta

0

Tajima's D

0

CLR

0

CSRT

0

Interpretation

Uncertain