SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO16815
Annotation
Lipopolysaccharide-induced_tumor_necrosis_factor-alpha_factor_[Operophtera_brumata]
Location in the cell
Extracellular   Reliability : 3.834
 

Sequence

CDS
ATGGGCCCTAAGCCTGCACGCTATACCTGCCCAAGCTGCAAAGCGTCCATCACGACCAGAGTAGAATATGTATCGGCGACGAAAACCCACCTGTGTGCTTTACTCCTTTGCTGTCTATGATCAGGCGATTTGTCTGGCGTAGACATAGCAGAAACTACTCAAAACCCGCCGCCATACAATAACCAGATGCAAACAGATTTATATCATGTCGTTCCCACTGTGCCGACTCAACAGTTCATCACAGTTCAAGCGCCGCAAATGGGCCCTAAGCCTGCACGCTATACCTGCCCAAGCTGCAAAGCGTCCATCACGACCAGAGTAGAATATGTATCGGCGACGAAAACCCACCTGTGTGCTTTACTCCTTTGCTGTCTATGCTATATTTCAGATCAAGGCGATTTGTCTGGCGTAGACATAGCAGAAACTACTCAAAACCCGCCGCCATACAATAACCAGATGCAAACAGATTTATATCATGTCGTTCCCACTGTGCCGACTCAACAGTTCATCACAGTTCAAGCGCCGCAAATGGGCCCTAAGCCTGCACGCTATACCTGCCCAAGCTGCAAAGCGTCCATCACGACCAGAGTAGAATATGTATCGGCGACGAAAACCCACCTGTGTGCTTTACTCCTTTGCTGTCTATGGTATTAA
Protein
MGPKPARYTCPSCKASITTRVEYVSATKTHLCALLLCCLXSGDLSGVDIAETTQNPPPYNNQMQTDLYHVVPTVPTQQFITVQAPQMGPKPARYTCPSCKASITTRVEYVSATKTHLCALLLCCLCYISDQGDLSGVDIAETTQNPPPYNNQMQTDLYHVVPTVPTQQFITVQAPQMGPKPARYTCPSCKASITTRVEYVSATKTHLCALLLCCLWY

Summary

Pfam
PF10601   zf-LITAF-like
Interpro
IPR006629   LITAF        + More
IPR037519   LITAF_fam       
ProteinModelPortal

Ontologies

GO

Topology

Length:
217
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.07078
Exp number, first 60 AAs:
0.03559
Total prob of N-in:
0.12275
outside
1  -  217
 
 

Population Genetic Test Statistics

Pi
3.24962
Theta
3.721108
Tajima's D
-0.335242
CLR
0
CSRT
0.291785410729464
Interpretation
Uncertain
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