Gene

KWMTBOMO16802

Annotation

non-LTR_retrotransposon_R1Bmks_ORF2_protein_[Bombyx_mori]

Location

Bomo_Scaf262(+):116-2468      View in EpiBrowser

Full name

Retrovirus-related Pol polyprotein from type-1 retrotransposable element R1      

Alternative Name

Retrovirus-related Pol polyprotein from type I retrotransposable element R1

Location in the cell

Mitochondrial   Reliability : 2.067

CDS

ATGTGGTTAACGGGGTGGACCGAGTTCGTGGCCGTATACGCACGGTGCGTTGTGGAGGGGACCTTCCCGCCGGTGTGGAAGGATGGCCGCCTACTTGTTCTGCCAAAGGGGAATGGCAGGCCCTTAACGGACCCTAAGGCGTATCGCCCGGTCACCTTGCTGCCGGTCCTGGGAAAGATCTTGGAGAAGGTATTATTGCAGTGTGCTCCTGGCCTCACCCATAGTATTAGTCCGCGCCAGCACGGGTTCTCTCCTGGACGCTCAACGGTGACGGCGCTGCGAACTCTGCTGGACGTGTCGCGCGCCTCGGAGCAGAGGTACGTAATGGCCATATTCTTGGACATCAGTGGAGCTTTCGATAACGCGTGGTGGCCCATGATAATGGTGAAGGCCAAGCGGAACTGTCCGCCCAACATCTATCGGATGCTGACGGACTATTTCCGCGGACGCCGTATTGCCGTTGTCGCGGGGGAATGTGCGGAATGGAAGGTGTCCACGATGGGCTGTCCGCAGGGCTCAGTGCTCGGGCCGACGCTCTGGAACGTTCTGATGGATGACCTGCTCGCCTTGCCGCAGGGGATAGAGGGAACAGAGATGGTCGCCTATGCCGATGACGTGACGGTACTGGTTAGGGGTGACTCACGGGCGCAGCTTGAGAGGAGAGCGCACGCCGTGCTAGGACTCGCAGAGGGGTGGGCGAGCAGGAATAAGCTCGATTTTGCCCCGGCGAAGTCCCGATGCATAATGCTGAGGGGAAAGTTTCAGCGTCCCCCTATAGTCCGGTACGGCAGTCATGTCATTCGGTTCGAGAACCAGGTGACGGTGTTGGGCGTCGTCTTCGACGATTGCCTCTCTTTCGCGCCGCATGCGGCGGCCATTGGCGAGAGGGCGAGCAGGTGCTTCGGCAAGATGTCTAGAGTTTCGGCTTCGGCTTGGGGGCTGCGATATAGGGCTTTGCGTGTCTTGTACATGGGCACTTATGTTACAACCCTTACCTATGCGGCGGCCGTATGGTATTTGCGGGCTGCTGTGCACGTCGTGCGCAGCGTGCTGCTTAGGACGCAGCGCCCGTCGTTGACGCTGCTAACGAAGGCCTACCGTTCGTGCAGCACGGCTGCTTTGCCGGTGTTGGCGGGCGTCCTGCCGGCGGACCTGGAGGTGACTCGTGCTGGACGGAGGATGCGGGAGTGCGAAGGATTGGCGCGGGAGTTGGCGGCGGAGAGACGACGACGGATCGACGGCGATGTCTTGGTAGTTTGGCAGAACAGGTGGGTGTCTGAGGGTAAGGGGAGGGAACTGTACAAGTTCTTTCCCGATGTTGCGGACAGGAAGAAGGCAACGTGGATGGAGCCGGACTATCAGACCTCGCAGATCCTCACGGGTCATGGGATCTTTAATAAGCGGTTGGCGGATATGCGACTGAGGGAGGGGCATGCTTGCGACTGCGGGGCGGTTGAGGAGGATAGGGACCATGTCCTGTGGGAGTGTCCTCTCTATGACGAAATCCGGGGCAGGATGCTCGATGGAATCTCGCGGTCTGAGGTGGGCCCAGTTTACCACGCGGACCTGGTCAGGGACGAGAAAAATTTTCGGCTCTTGCGCGAGTTCGCGCATACATGGCACACGGCGCGCACTGCGCGCGAATCACGAGGACTGCCTGGCGACGAAGAATGTGGGTGA

Protein

MWLTGWTEFVAVYARCVVEGTFPPVWKDGRLLVLPKGNGRPLTDPKAYRPVTLLPVLGKILEKVLLQCAPGLTHSISPRQHGFSPGRSTVTALRTLLDVSRASEQRYVMAIFLDISGAFDNAWWPMIMVKAKRNCPPNIYRMLTDYFRGRRIAVVAGECAEWKVSTMGCPQGSVLGPTLWNVLMDDLLALPQGIEGTEMVAYADDVTVLVRGDSRAQLERRAHAVLGLAEGWASRNKLDFAPAKSRCIMLRGKFQRPPIVRYGSHVIRFENQVTVLGVVFDDCLSFAPHAAAIGERASRCFGKMSRVSASAWGLRYRALRVLYMGTYVTTLTYAAAVWYLRAAVHVVRSVLLRTQRPSLTLLTKAYRSCSTAALPVLAGVLPADLEVTRAGRRMRECEGLARELAAERRRRIDGDVLVVWQNRWVSEGKGRELYKFFPDVADRKKATWMEPDYQTSQILTGHGIFNKRLADMRLREGHACDCGAVEEDRDHVLWECPLYDEIRGRMLDGISRSEVGPVYHADLVRDEKNFRLLREFAHTWHTARTARESRGLPGDEECG

Catalytic Activity

a 2'-deoxyribonucleoside 5'-triphosphate + DNA(n) = diphosphate + DNA(n+1)

Keywords

Endonuclease   Hydrolase   Nuclease   Nucleotidyltransferase   RNA-directed DNA polymerase   Transferase   Transposable element  

Feature

chain  Retrovirus-related Pol polyprotein from type-1 retrotransposable element R1

Uniprot

Q5NTZ0   V9H050   Q7M4J4   A0A2W1BCT4   B9WPT8   A0A1B6E1N0   + More
A0A1B6DRM7   A0A023EYP7   J9KCN1   A0A224XAL8   A0A2S2PB75   J9M9N3   J9JYN9   A0A1B6FSS1   K7JAI1   J9KI58   J9JXR0   J9KY35   J9LPJ1   J9LQV9   K7JMI9   J9K5I1   J9L5C6   D7ELI3   A0A0J7KTH2   J9KSJ8   J9KMZ9   J9K370   J9LVC2   J9JNA9   J9LES5   J9KRH3   K7JCH4   X1WL18   A0A139WA44   Q03277   J9M8T8   J9KVB7   X1XHQ0   J9MA03   J9MA04   J9LPX0   X1WUQ0   J9KPX6   J9LMF6   J9L798   J9LPX1   J9LPP1   J9LES0   J9LNF5   J9L0V3   J9M4Z2   X1WNU5   A0A224X653   A0A1B6LVQ6   V5I881   J9KPC7   J9K2L0   Q868T0   D3JL25   D3JL24   J9LLG7   J9LFF7   J9L8H7   J9M112   K7JXI5   J9LRE9   J9LRW2   J9LCW5   J9M627   A0A139W914   A0A2M4CKQ7   A0A0E3W2C5   A0A142LX43   J9KCR1   Q868S2   A0A2S2PRL8   A0A2M4CS98   V9GZD9   A0A2M4BC01   A0A2M4BDI3  

Pubmed

15814816    2447482    17537809    30299944    28756777    25474469    + More
20075255    18362917    19820115    8383793    12644555    25527032    1328871   

EMBL

AB182560    BAD82946.1    M19755    AAC13649.1    KZ150483    PZC70720.1    + More
FM995623    CAX36788.1    GEDC01005462    JAS31836.1    GEDC01008950    JAS28348.1    GBBI01004973    JAC13739.1    ABLF02007988    ABLF02009571    ABLF02063287    GFTR01008452    JAW07974.1    GGMR01014080    MBY26699.1    ABLF02003402    ABLF02025552    ABLF02031460    ABLF02044302    ABLF02059589    ABLF02065568    ABLF02066832    ABLF02066838    ABLF02011142    GECZ01016512    JAS53257.1    AAZX01006426    ABLF02012116    ABLF02012122    ABLF02012123    ABLF02014981    ABLF02023877    ABLF02059855    ABLF02012872    ABLF02012873    ABLF02012874    ABLF02012875    ABLF02042485    ABLF02014982    AAZX01008070    ABLF02027069    ABLF02027071    ABLF02019947    ABLF02019948    ABLF02039158    ABLF02039161    ABLF02039163    ABLF02053351    KQ972959    EFA12187.2    LBMM01003366    KMQ93606.1    ABLF02008578    ABLF02039177    ABLF02008887    ABLF02020087    ABLF02008516    ABLF02041501    ABLF02008889    ABLF02041820    ABLF02020082    ABLF02020086    ABLF02020092    AAZX01004801    ABLF02010037    ABLF02010039    ABLF02066755    KQ971637    KYB24784.1    L00945    ABLF02007471    ABLF02007472    ABLF02022279    ABLF02010931    ABLF02006737    ABLF02008888    ABLF02016960    ABLF02032572    ABLF02020044    ABLF02012457    ABLF02012458    ABLF02019936    ABLF02057951    ABLF02016436    ABLF02007045    ABLF02012124    ABLF02006947    ABLF02022724    ABLF02055397    ABLF02006133    ABLF02012459    ABLF02010919    ABLF02010923    ABLF02010926    ABLF02010927    ABLF02055406    GFTR01008469    JAW07957.1    GEBQ01012211    JAT27766.1    GALX01005145    JAB63321.1    ABLF02034348    ABLF02004512    ABLF02004513    ABLF02046624    ABLF02049075    ABLF02059998    ABLF02065990    AB090812    BAC57900.1    GU205094    ADC53707.1    GU205093    ADC53706.1    ABLF02005552    ABLF02005553    ABLF02003498    ABLF02003499    ABLF02003500    ABLF02014855    ABLF02016356    ABLF02008331    AAZX01023285    ABLF02019548    ABLF02007852    ABLF02010929    ABLF02005550    ABLF02005551    ABLF02006022    ABLF02006024    ABLF02012453    ABLF02012456    ABLF02012624    KQ972822    KXZ75771.1    GGFL01001583    MBW65761.1    HACL01000281    CFW94575.1    KU543682    AMS38369.1    ABLF02026040    AB090816    BAC57908.1    GGMR01019493    MBY32112.1    GGFL01004044    MBW68222.1    M93691    AAA29365.1    GGFJ01001370    MBW50511.1    GGFJ01001727    MBW50868.1   

Proteomes

UP000007819    UP000002358    UP000007266    UP000036403   

PRIDE

Q5NTZ0    V9H050    Q7M4J4   

Pfam

PF14529   Exo_endo_phos_2        + More
PF00078   RVT_1
PF05485   THAP
PF07707   BACK
PF00004   AAA
PF17862   AAA_lid_3
PF16725   Nucleolin_bd
PF05225   HTH_psq
PF02892   zf-BED
PF05585   DUF1758
PF03564   DUF1759
PF00098   zf-CCHC
PF13966   zf-RVT

Interpro

IPR000477   RT_dom        + More
IPR005135   Endo/exonuclease/phosphatase       
IPR036691   Endo/exonu/phosph_ase_sf       
IPR006612   THAP_Znf       
IPR001878   Znf_CCHC       
IPR036875   Znf_CCHC_sf       
IPR011705   BACK       
IPR003959   ATPase_AAA_core       
IPR027417   P-loop_NTPase       
IPR003960   ATPase_AAA_CS       
IPR031996   NVL2_nucleolin-bd       
IPR041569   AAA_lid_3       
IPR003593   AAA+_ATPase       
IPR038100   NLV2_N_sf       
IPR007889   HTH_Psq       
IPR013087   Znf_C2H2_type       
IPR036236   Znf_C2H2_sf       
IPR003656   Znf_BED       
IPR005312   DUF1759       
IPR008737   Peptidase_asp_put       
IPR026960   RVT-Znf       

SUPFAM

SSF56219   SSF56219        + More
SSF57756   SSF57756       
SSF52540   SSF52540       
SSF57667   SSF57667       

Gene 3D

3.60.10.10     1.10.10.2010    

ProteinModelPortal

Q5NTZ0   V9H050   Q7M4J4   A0A2W1BCT4   B9WPT8   A0A1B6E1N0   + More
A0A1B6DRM7   A0A023EYP7   J9KCN1   A0A224XAL8   A0A2S2PB75   J9M9N3   J9JYN9   A0A1B6FSS1   K7JAI1   J9KI58   J9JXR0   J9KY35   J9LPJ1   J9LQV9   K7JMI9   J9K5I1   J9L5C6   D7ELI3   A0A0J7KTH2   J9KSJ8   J9KMZ9   J9K370   J9LVC2   J9JNA9   J9LES5   J9KRH3   K7JCH4   X1WL18   A0A139WA44   Q03277   J9M8T8   J9KVB7   X1XHQ0   J9MA03   J9MA04   J9LPX0   X1WUQ0   J9KPX6   J9LMF6   J9L798   J9LPX1   J9LPP1   J9LES0   J9LNF5   J9L0V3   J9M4Z2   X1WNU5   A0A224X653   A0A1B6LVQ6   V5I881   J9KPC7   J9K2L0   Q868T0   D3JL25   D3JL24   J9LLG7   J9LFF7   J9L8H7   J9M112   K7JXI5   J9LRE9   J9LRW2   J9LCW5   J9M627   A0A139W914   A0A2M4CKQ7   A0A0E3W2C5   A0A142LX43   J9KCR1   Q868S2   A0A2S2PRL8   A0A2M4CS98   V9GZD9   A0A2M4BC01   A0A2M4BDI3  

PDB

6AR3     E-value=0.000760631,     Score=103

KEGG

NA   

GO

GO:0003964   GO:0016021   GO:0003677   GO:0003676   GO:0008270   GO:0005524   GO:0004519  

Length:

559

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

14.92828

Exp number, first 60 AAs:

0.03656

Total prob of N-in:

0.11312

outside

1  -  559

 

 

Pi

0

Theta

0

Tajima's D

0

CLR

0

CSRT

0

Interpretation

Uncertain