Gene

KWMTBOMO16798

Annotation

Putative_115_kDa_protein_in_type-1_retrotransposable_element_R1DM-like_Protein_[Tribolium_castaneum]

Location

Bomo_Scaf245(+):2886-4195      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 2.128

CDS

ATGGCTGCAATAGGGGTCGATACTGGGCCCACGCTGTGGAACATACTCTATGATGGGGTACTGCGCCTCGAACTGGGGGACGGGGCAAAATTAATAGGCTTTGCTGACGATTTAGCTCTGGTGGTGTCAGCAAAGAAGGAAGCAGAACTGATGTCAATAACGAACGTAGCTCTAGAAAAGATCAGCGCTTGGATGAAGCAGAAGCGGCTACACTTGGCCCAGAAAAGACCGAGGCAATTCCGAAAGATTGACGGCCGCCCTTGGCCAAATTATGCCAGAAAAGGAGGGCCGAGGTCAAGCAAGCGCAGACTACTGGCATCCGCGATACAATCTGTGATGTTATATGGAGCACCGGTGTGGGCAAGGGTAATGAATGTAGCGAAGTACAGGAACATGTATAGCAAAGTGCAACGACAGCTGGCAATACGCATCTGTGGAGCTTACCGTACTATATCGCTAGACGCCGTCTTGGTGATAGCGGGCCTGATACCGATAGAACGGCTAGCAAAGGAACGGCAACGCTACTACCACGAGGGGACAAGAACGAGAGAAGAGGAAAGAGCACATACAATAAAAGAATGGAACGAGACTGGCAGAAGGAGGGAAAAGGCCCTAAGTGGGCATGGAGTTTTCAACACTTACCTGCATGCAATAGGGAAAGCAGAAAGCGCAAGTTGTCCATACTGCGAACATGTTGACACACCGGAACATGCCCTATTTCAATGCAAAAAGTTCTCAGAACTAAGAGAGAAAACGGAGGGAAGTGACGGAAAGGTGACTGTGGAAAACCTGATGGTGAGAATGATCCATAGTAAAGAAGAATGGGATAAATATGCGGGAATGCTCAAAGAGATAATGAGAGTGCGGGAAAAGGACGAAAGACTAAGGCAAGAAATCTATCTATAA

Protein

MAAIGVDTGPTLWNILYDGVLRLELGDGAKLIGFADDLALVVSAKKEAELMSITNVALEKISAWMKQKRLHLAQKRPRQFRKIDGRPWPNYARKGGPRSSKRRLLASAIQSVMLYGAPVWARVMNVAKYRNMYSKVQRQLAIRICGAYRTISLDAVLVIAGLIPIERLAKERQRYYHEGTRTREEERAHTIKEWNETGRRREKALSGHGVFNTYLHAIGKAESASCPYCEHVDTPEHALFQCKKFSELREKTEGSDGKVTVENLMVRMIHSKEEWDKYAGMLKEIMRVREKDERLRQEIYL

Uniprot

A0A1B6HLL2   V5I8F3   D7GXX9   F7IYV2   A0A0A9Z5Y1   A0A139W9B3   + More
A0A139W9A6   A0A139WN93   A0A139WNC9   D7GY87   D6WC19   U4UPV7   F7IYV6   F7IYV5   V5I881   A0A224XIZ2   A0A139W942   A0A146MAT2   F7IYV3   N6UJZ6   A0A139W9I2   X1WT13   J9KM84   V5G2Q2   A0A139W9J0   N6UHH2   N6TYN9   J9M402   J9LDW8   A0A3Q0JIB3   A0A142LX37   A0A224XA82   X1WZ64   A0A139WAH4   A0A2H8TIE5   Q868T0   A0A1B6J232   A0A023EQB7   A0A0J7NAB3   K7JS67   F7IYU8   U4US44   A0A139W940   A0A0K8VFR3   J9KT70   X1X3M7   K7JTN9   T1DG89   A0A2M4BC24   A0A1W7R6C5   A0A2M4BC18   A0A139W939   D7EKD8   A0A0A1WPA4   W8ANK7   W8ADE4   Q868R2   T1DG59   J9K6F0   J9KZ24   A0A2M4AST8   A0A0Q9WRU0   A0A2S2P6S8   A0A2H8TR36   A0A139WA31   F7IYV7   K7JP42   J9KJG8   A0A023EQZ1   A0A2S2P488   A0A2S2QUS9   K7JHT6   A0A1B6KDF3   A0A224XSH6   X1XNG1   A0A2M4CL45   A0A2S2NJ82   A0A2M4ADW9   X1WMW4   X1WJY4   D7EL82   J9LAC1   A0A2S2P557   J9LBB9   A0A2H8TIT6   K7JS15   A0A2S2NQQ6   A0A023EW96   A0A1S4EMG7   A0A1W7R6I9   J9LVU7   U4UCW4   J9KNS1   A0A142LX45   J9JY94   N6TUW3   D7EKF6   A0A2S2PN34   A0A2S2NME4  

Pubmed

18362917    19820115    25401762    23537049    26823975    25527032    + More
12644555    24945155    20075255    24330624    25830018    24495485    17994087   

EMBL

GECU01032129    JAS75577.1    GALX01004785    JAB63681.1    KQ972160    EFA13619.2    + More
AB593323    BAK38643.1    GBHO01002982    JAG40622.1    KQ972544    KXZ75869.1    KXZ75870.1    KQ971310    KYB29499.1    KYB29500.1    KQ971864    EFA13315.2    KQ971309    EEZ99146.1    KI209886    ERL96104.1    AB593326    BAK38647.1    AB593325    BAK38646.1    GALX01005145    JAB63321.1    GFTR01008427    JAW07999.1    KQ972691    KXZ75805.1    GDHC01002080    JAQ16549.1    AB593324    BAK38644.1    APGK01020896    KB740258    ENN80981.1    KQ972255    KYB24568.1    ABLF02014378    ABLF02018942    ABLF02041885    GALX01004171    JAB64295.1    KQ972226    KYB24577.1    APGK01020183    KB740172    ENN81190.1    APGK01005465    KB736249    ENN83233.1    ABLF02028779    ABLF02016435    ABLF02016436    ABLF02064751    KU543679    AMS38363.1    GFTR01007160    JAW09266.1    ABLF02011183    ABLF02041884    KQ971388    KYB24913.1    GFXV01002090    MBW13895.1    AB090812    BAC57900.1    GECU01014493    JAS93213.1    GAPW01001826    JAC11772.1    LBMM01007638    KMQ89555.1    AAZX01005297    AB593321    BAK38639.1    KI208746    ERL95927.1    KXZ75806.1    GDHF01014602    JAI37712.1    ABLF02010223    ABLF02005416    ABLF02064149    AAZX01001067    AAZX01015872    GALA01001776    JAA93076.1    GGFJ01001454    MBW50595.1    GEHC01000964    JAV46681.1    GGFJ01001453    MBW50594.1    KXZ75807.1    DS497741    EFA13096.1    GBXI01013438    JAD00854.1    GAMC01020517    JAB86038.1    GAMC01020519    GAMC01020515    JAB86040.1    AB090821    BAC57918.1    GALA01000302    JAA94550.1    ABLF02012448    ABLF02012450    ABLF02012455    ABLF02012460    ABLF02006132    GGFK01010357    MBW43678.1    CH963857    KRF98317.1    GGMR01012534    MBY25153.1    GFXV01003903    MBW15708.1    KQ971675    KYB24771.1    AB593327    BAK38648.1    AAZX01012143    AAZX01012194    ABLF02041886    GAPW01002043    JAC11555.1    GGMR01011682    MBY24301.1    GGMS01012210    MBY81413.1    AAZX01000981    GEBQ01030504    JAT09473.1    GFTR01004944    JAW11482.1    ABLF02043108    GGFL01001777    MBW65955.1    GGMR01004600    MBY17219.1    GGFK01005660    MBW38981.1    ABLF02059310    ABLF02011238    DS497819    EFA11934.1    ABLF02017307    GGMR01011974    MBY24593.1    ABLF02020562    GFXV01002242    MBW14047.1    AAZX01016219    GGMR01006838    MBY19457.1    GAPW01000192    JAC13406.1    GEHC01000915    JAV46730.1    ABLF02034925    KB632216    ERL90163.1    ABLF02018808    KU543683    AMS38371.1    ABLF02007989    APGK01051323    KB741189    ENN73055.1    DS497745    EFA13145.1    GGMR01018251    MBY30870.1    GGMR01005740    MBY18359.1   

Proteomes

UP000007266    UP000030742    UP000019118    UP000007819    UP000079169    UP000036403    + More
UP000002358    UP000007798   

Pfam

PF00078   RVT_1        + More
PF14529   Exo_endo_phos_2
PF00098   zf-CCHC
PF13843   DDE_Tnp_1_7
PF05699   Dimer_Tnp_hAT

Interpro

IPR000477   RT_dom        + More
IPR036691   Endo/exonu/phosph_ase_sf       
IPR005135   Endo/exonuclease/phosphatase       
IPR036875   Znf_CCHC_sf       
IPR000663   Natr_peptide       
IPR001878   Znf_CCHC       
IPR029526   PGBD       
IPR037220   BED_dom       
IPR012337   RNaseH-like_sf       
IPR008906   HATC_C_dom       

SUPFAM

SSF56219   SSF56219        + More
SSF57756   SSF57756       
SSF53098   SSF53098       
SSF140996   SSF140996       

Gene 3D

3.60.10.10    

ProteinModelPortal

A0A1B6HLL2   V5I8F3   D7GXX9   F7IYV2   A0A0A9Z5Y1   A0A139W9B3   + More
A0A139W9A6   A0A139WN93   A0A139WNC9   D7GY87   D6WC19   U4UPV7   F7IYV6   F7IYV5   V5I881   A0A224XIZ2   A0A139W942   A0A146MAT2   F7IYV3   N6UJZ6   A0A139W9I2   X1WT13   J9KM84   V5G2Q2   A0A139W9J0   N6UHH2   N6TYN9   J9M402   J9LDW8   A0A3Q0JIB3   A0A142LX37   A0A224XA82   X1WZ64   A0A139WAH4   A0A2H8TIE5   Q868T0   A0A1B6J232   A0A023EQB7   A0A0J7NAB3   K7JS67   F7IYU8   U4US44   A0A139W940   A0A0K8VFR3   J9KT70   X1X3M7   K7JTN9   T1DG89   A0A2M4BC24   A0A1W7R6C5   A0A2M4BC18   A0A139W939   D7EKD8   A0A0A1WPA4   W8ANK7   W8ADE4   Q868R2   T1DG59   J9K6F0   J9KZ24   A0A2M4AST8   A0A0Q9WRU0   A0A2S2P6S8   A0A2H8TR36   A0A139WA31   F7IYV7   K7JP42   J9KJG8   A0A023EQZ1   A0A2S2P488   A0A2S2QUS9   K7JHT6   A0A1B6KDF3   A0A224XSH6   X1XNG1   A0A2M4CL45   A0A2S2NJ82   A0A2M4ADW9   X1WMW4   X1WJY4   D7EL82   J9LAC1   A0A2S2P557   J9LBB9   A0A2H8TIT6   K7JS15   A0A2S2NQQ6   A0A023EW96   A0A1S4EMG7   A0A1W7R6I9   J9LVU7   U4UCW4   J9KNS1   A0A142LX45   J9JY94   N6TUW3   D7EKF6   A0A2S2PN34   A0A2S2NME4  

KEGG

NA   

GO

GO:0005179   GO:0003676   GO:0008270   GO:0005576   GO:0046983   GO:0003964   GO:0016021  

Length:

301

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

24.24588

Exp number, first 60 AAs:

0.02172

Total prob of N-in:

0.09692

outside

1  -  301

 

 

Pi

0

Theta

0

Tajima's D

0

CLR

0

CSRT

0

Interpretation

Uncertain