Gene

KWMTBOMO16796

Pre Gene Modal

BGIBMGA004239

Annotation

hypothetical_protein_TcasGA2_TC032967_[Tribolium_castaneum]

Location

Bomo_Scaf245(+):656-1839      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.837 Nuclear   Reliability : 1.862

CDS

ATGGACAGCTCGGTGGAAATGGAGGAAGTAAGGGAGGACTTAAAGTCGACAAACTTGATAAAAAAAGTAGACAGCTTGGAGATAAGATCACTGAGACCGATGGGCGGTGGAAACCAGACGGCAACAGTGATCCTGGATGAAGAGGATGCAGGAAGGCTGCTTGCGGGTGGGAAGATAAGAGTAGGGCTAAATATATGCCACATTCATGAAAGAATTGAACTGCTGAGATGCTACCGGTGCTGGGAATATGGCCACAAAGCGGAAAACTGCAACGATAAATATGGACCGAGGGAAAGCCGCGCACGACCTACTTCTGGCAACTGCGAGCAAATGAAAGCGGATCTCGTGATGCTAGCTGAACCCAATAGAAAGCTGGCAAAAGCTGCTGGATGGGAGTGCGACACCAGGGGAGATGCAGCCCTAGTGATTCTTAATAAAACACTGACGGTTTCTGAAATTTATAGGGGGAAGGGATTTGTTGGGTTCAAGATGAAGCACTTTGCCGCGTTCAGCTGTTACATATCTCCCAACTGCAGTTTTGAGGAGTTCAAAGCTGACGTCGATGAGCTTTGGACACTACTTAAAAAACAAAAGACACCGATCCTAGTGGCAGGAGATTTTAACTCTGCATCGAGAGCGTGGGGCAGTAAAGTAACCAACAAAAGGGGCCACTACCTGCTGGAAATGGTGGCGGACCTCGACACTGTCATCATGAATGAAGGCGTGACCCCAACTTTTGAAAGAGGAGACAGAACATCCAGGGCCCGACATCACCATGGCCTCTGA

Protein

MDSSVEMEEVREDLKSTNLIKKVDSLEIRSLRPMGGGNQTATVILDEEDAGRLLAGGKIRVGLNICHIHERIELLRCYRCWEYGHKAENCNDKYGPRESRARPTSGNCEQMKADLVMLAEPNRKLAKAAGWECDTRGDAALVILNKTLTVSEIYRGKGFVGFKMKHFAAFSCYISPNCSFEEFKADVDELWTLLKKQKTPILVAGDFNSASRAWGSKVTNKRGHYLLEMVADLDTVIMNEGVTPTFERGDRTSRARHHHGL

Uniprot

A0A139WNC9   A0A139W9B3   A0A139WN93   A0A139WAH4   J9KTA9   A0A139W8J5   + More
K7JJX6   A0A139W9A6   A0A139WNQ8   J9L0J0   J9LLK5   X1X2B5   J9LA43   J9JWJ3   K7JEF7   K7JE56   J9JZR8   A0A139W942   T1HNV4   J9KV04   J9KJG8   J9KM84   X1WZ64   A0A139W8J2   A0A0J7KRB8   J9KPP8   A0A0J7KDK4   J9LQQ1   J9K6F0   K7JRD9   J9KK06   X1WY70   A0A0J7KIS5   X1WJY4   A0A139W9X8   X1WXT5   J9KWM9   A0A0J7NFZ0   R9XJ63  

Pubmed

18362917    19820115    20075255   

EMBL

KQ971310    KYB29500.1    KQ972544    KXZ75869.1    KYB29499.1    KQ971388    + More
KYB24913.1    ABLF02009502    KQ973256    KXZ75595.1    AAZX01002194    AAZX01004256    AAZX01005003    AAZX01005163    AAZX01006661    AAZX01014356    AAZX01015316    AAZX01015543    AAZX01015804    AAZX01023675    KXZ75870.1    KQ971308    KYB29553.1    ABLF02027248    ABLF02006527    ABLF02019402    ABLF02059310    ABLF02018098    ABLF02013358    ABLF02013361    ABLF02054869    AAZX01003808    AAZX01004267    AAZX01010366    AAZX01005125    ABLF02009709    ABLF02009711    KQ972691    KXZ75805.1    ACPB03005661    ABLF02004674    ABLF02004675    ABLF02004676    ABLF02011637    ABLF02041886    ABLF02018942    ABLF02041885    ABLF02011183    ABLF02041884    KQ973252    KXZ75596.1    LBMM01003988    KMQ92922.1    ABLF02009991    ABLF02009992    ABLF02054952    LBMM01008902    KMQ88543.1    ABLF02030663    ABLF02041312    ABLF02012448    ABLF02012450    ABLF02012455    ABLF02012460    AAZX01006236    AAZX01011971    AAZX01017287    ABLF02041309    ABLF02055493    ABLF02038948    ABLF02041307    LBMM01006977    KMQ90149.1    ABLF02011238    KQ971869    KYB24708.1    ABLF02004854    ABLF02041317    ABLF02011927    LBMM01005474    KMQ91485.1    EF710639    AGO14404.1   

Proteomes

UP000007266    UP000007819    UP000002358    UP000015103    UP000036403   

Pfam

PF00078   RVT_1        + More
PF14529   Exo_endo_phos_2
PF00098   zf-CCHC
PF10523   BEN
PF13359   DDE_Tnp_4
PF12017   Tnp_P_element
PF00075   RNase_H

Interpro

IPR005135   Endo/exonuclease/phosphatase        + More
IPR001878   Znf_CCHC       
IPR036691   Endo/exonu/phosph_ase_sf       
IPR036875   Znf_CCHC_sf       
IPR000477   RT_dom       
IPR000663   Natr_peptide       
IPR001584   Integrase_cat-core       
IPR012337   RNaseH-like_sf       
IPR018379   BEN_domain       
IPR021896   Transposase_37       
IPR027806   HARBI1_dom       
IPR002156   RNaseH_domain       
IPR036397   RNaseH_sf       

SUPFAM

SSF57756   SSF57756        + More
SSF56219   SSF56219       
SSF53098   SSF53098       

Gene 3D

3.60.10.10     3.30.420.10    

ProteinModelPortal

A0A139WNC9   A0A139W9B3   A0A139WN93   A0A139WAH4   J9KTA9   A0A139W8J5   + More
K7JJX6   A0A139W9A6   A0A139WNQ8   J9L0J0   J9LLK5   X1X2B5   J9LA43   J9JWJ3   K7JEF7   K7JE56   J9JZR8   A0A139W942   T1HNV4   J9KV04   J9KJG8   J9KM84   X1WZ64   A0A139W8J2   A0A0J7KRB8   J9KPP8   A0A0J7KDK4   J9LQQ1   J9K6F0   K7JRD9   J9KK06   X1WY70   A0A0J7KIS5   X1WJY4   A0A139W9X8   X1WXT5   J9KWM9   A0A0J7NFZ0   R9XJ63  

PDB

1WDU     E-value=0.00016695,     Score=105

KEGG

NA   

GO

GO:0003676   GO:0008270   GO:0005179   GO:0005576   GO:0015074   GO:0004803   GO:0006313   GO:0016021   GO:0003964   GO:0004523   GO:0016020   GO:0004888   GO:0007166   GO:0016773   GO:0006096   GO:0006281   GO:0006259  

Length:

261

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00132

Exp number, first 60 AAs:

0

Total prob of N-in:

0.02793

outside

1  -  261

 

 

Pi

0

Theta

0

Tajima's D

0

CLR

0

CSRT

0

Interpretation

Uncertain